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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGSF8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
327.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
274.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
225.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
223.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
220.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
208.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
204.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
201.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
196.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
181.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
154.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
146.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
146.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
143.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
140.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
135.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
131.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
131.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
131.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
131.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
126.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
126.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
123.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
122.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
121.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
118.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
115.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
114.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
113.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
113.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
112.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
112.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
111.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
111.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
110.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
108.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
108.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
108.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
107.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
106.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
104.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
103.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
102.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
101.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
101.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
100.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
99.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
99.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
99.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
97.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
96.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
96.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
96.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
95.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
94.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
94.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
93.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
92.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
92.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
92.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
91.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
91.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
90.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
90.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
90.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
89.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
89.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
87.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
85.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
84.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
84.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
83.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
82.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
81.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
81.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
80.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
79.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
79.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
79.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
79.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
77.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
77.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
76.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
76.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
76.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
75.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
74.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
73.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
73.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
73.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
73.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
72.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
72.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
71.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
70.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
70.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
69.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
69.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
68.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
68.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
68.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
67.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
67.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
67.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
67.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
66.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
65.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
65.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
64.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
64.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
63.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
62.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
62.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
62.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
60.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
60.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
59.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
58.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
58.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
57.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
57.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
55.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
55.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
54.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
49.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
48.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
47.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
44.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
43.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
43.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
43.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
42.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
39.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
38.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
38.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
36.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
34.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
32.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGSF8 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.8
Number of samples
231
Samples
Sample
Description
TPM
DO45171
0 years, male, NA, stage:3, alive, 600 days
143.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
140.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
137.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
132.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
113.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
110.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
108.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
106.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
103.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
97.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
96.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
93.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
93.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
92.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
90.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
90.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
90.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
87.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
80.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
79.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
77.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
76.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
76.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
75.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
73.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
71.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
71.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
70.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
69.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
69.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
68.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
67.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
65.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
62.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
62.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
62.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
61.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
61.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
59.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
58.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
57.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
57.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
56.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
55.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
54.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
54.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
51.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
48.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
47.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
44.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
43.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
40.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
37.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
29.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.4
553
Tumor
1.0
981
Tumor
1.0
112
Tumor
1.0
435
Tumor
1.0
1025
Tumor
0.9
393
Tumor
0.9
433
Tumor
0.8
873
Tumor
0.8
271
Tumor
0.8
425
Tumor
0.8
131
Tumor
0.8
977
Tumor
0.7
615
Tumor
0.7
867
Tumor
0.7
824
Normal
0.7
1041
Tumor
0.7
481
Tumor
0.7
451
Tumor
0.6
517
Tumor
0.6
915
Tumor
0.6
227
Tumor
0.6
427
Tumor
0.5
261
Tumor
0.5
955
Tumor
0.5
436
Normal
0.5
415
Tumor
0.5
477
Tumor
0.5
715
Tumor
0.5
327
Tumor
0.5
534
Normal
0.5
465
Tumor
0.5
968
Normal
0.5
487
Tumor
0.4
738
Normal
0.4
926
Normal
0.4
912
Normal
0.4
944
Normal
0.4
777
Tumor
0.4
984
Normal
0.4
257
Tumor
0.4
554
Normal
0.4
368
Normal
0.4
1014
Normal
0.4
922
Normal
0.4
127
Tumor
0.4
647
Tumor
0.4
462
Normal
0.4
778
Normal
0.4
426
Normal
0.4
526
Normal
0.4
356
Normal
0.4
878
Normal
0.4
513
Tumor
0.4
818
Normal
0.3
314
Normal
0.3
196
Normal
0.3
414
Normal
0.3
424
Normal
0.3
1046
Normal
0.3
432
Normal
0.3
172
Normal
0.3
698
Normal
0.3
1045
Tumor
0.3
171
Tumor
0.3
743
Tumor
0.3
546
Normal
0.3
464
Normal
0.3
1027
Tumor
0.3
141
Tumor
0.3
452
Normal
0.3
716
Normal
0.3
396
Normal
0.3
162
Normal
0.3
353
Tumor
0.3
394
Normal
0.3
448
Normal
0.3
744
Normal
0.3
328
Normal
0.3
222
Normal
0.3
877
Tumor
0.3
1022
Normal
0.3
528
Normal
0.3
392
Normal
0.3
618
Normal
0.3
286
Normal
0.3
696
Normal
0.3
616
Normal
0.3
221
Tumor
0.3
742
Normal
0.3
862
Normal
0.3
861
Tumor
0.3
741
Tumor
0.3
882
Normal
0.2
484
Normal
0.2
884
Normal
0.2
186
Normal
0.2
1015
Tumor
0.2
488
Normal
0.2
518
Normal
0.2
823
Tumor
0.2
858
Normal
0.2
514
Normal
0.2
664
Normal
0.2
483
Tumor
0.2
648
Normal
0.2
456
Normal
0.2
428
Normal
0.2
258
Normal
0.2
232
Normal
0.2
142
Normal
0.2
341
Tumor
0.2
482
Normal
0.2
212
Normal
0.2
388
Normal
0.2
272
Normal
0.2
636
Normal
0.2
344
Normal
0.2
568
Normal
0.2
722
Normal
0.2
954
Normal
0.2
914
Normal
0.2
376
Normal
0.2
864
Normal
0.2
228
Normal
0.2
714
Normal
0.2
231
Tumor
0.2
963
Tumor
0.2
868
Normal
0.2
964
Normal
0.2
665
Tumor
0.2
446
Normal
0.2
123
Tumor
0.2
128
Normal
0.2
1016
Normal
0.2
572
Normal
0.2
567
Tumor
0.2
342
Normal
0.2
756
Normal
0.2
191
Tumor
0.2
924
Normal
0.2
938
Normal
0.2
816
Normal
0.1
145
Tumor
0.1
268
Normal
0.1
956
Normal
0.1
422
Normal
0.1
468
Normal
0.1
114
Normal
0.1
686
Normal
0.1
1043
Tumor
0.1
1032
Normal
0.1
416
Normal
0.1
298
Normal
0.1
466
Normal
0.1
358
Normal
0.1
214
Normal
0.1
685
Tumor
0.1
515
Tumor
0.1
352
Normal
0.1
445
Tumor
0.1
982
Normal
0.1
332
Normal
0.1
494
Normal
0.1
1028
Normal
0.1
746
Normal
0.1
361
Tumor
0.1
412
Normal
0.1
883
Tumor
0.1
354
Normal
0.1
642
Normal
0.1
111
Normal
0.1
918
Normal
0.1
1026
Normal
0.1
278
Normal
0.1
666
Normal
0.1
863
Tumor
0.1
564
Normal
0.1
966
Normal
0.1
628
Normal
0.1
874
Normal
0.1
737
Tumor
0.1
148
Normal
0.1
727
Tumor
0.1
978
Normal
0.1
362
Normal
0.1
786
Normal
0.1
721
Tumor
0.1
188
Normal
0.1
136
Normal
0.0
1042
Normal
0.0
913
Tumor
0.0
423
Tumor
0.0
472
Normal
0.0
364
Normal
0.0
516
Normal
0.0
386
Normal
0.0
262
Normal
0.0
384
Normal
0.0
571
Tumor
0.0
1044
Normal
0.0
785
Tumor
0.0
958
Normal
0.0
976
Normal
0.0
965
Tumor
0.0
267
Tumor
0.0
195
Tumor
0.0
723
Tumor
0.0
185
Tumor
0.0
146
Normal
0.0
366
Normal
0.0
916
Normal
0.0
866
Normal
0.0
218
Normal
0.0
975
Tumor
0.0
1021
Tumor
0.0
132
Normal
0.0
434
Normal
0.0
124
Normal
0.0
533
Tumor
0.0
937
Tumor
0.0
443
Tumor
0.0
135
Tumor
0.0
641
Tumor
0.0
558
Normal
0.0
852
Normal
0.0
357
Tumor
-0.1
627
Tumor
-0.1
813
Tumor
-0.1
952
Normal
-0.1
471
Tumor
-0.1
1031
Tumor
-0.1
755
Tumor
-0.1
524
Normal
-0.1
138
Normal
-0.1
312
Normal
-0.1
478
Normal
-0.1
431
Tumor
-0.1
662
Normal
-0.1
284
Normal
-0.1
881
Tumor
-0.1
525
Tumor
-0.1
498
Normal
-0.1
113
Tumor
-0.1
925
Tumor
-0.1
213
Tumor
-0.1
126
Normal
-0.1
224
Normal
-0.1
474
Normal
-0.1
728
Normal
-0.1
277
Tumor
-0.1
192
Normal
-0.1
363
Tumor
-0.1
491
Tumor
-0.1
672
Normal
-0.1
536
Normal
-0.2
444
Normal
-0.2
574
Normal
-0.2
697
Tumor
-0.2
695
Tumor
-0.2
857
Tumor
-0.2
1013
Tumor
-0.2
217
Tumor
-0.2
538
Normal
-0.2
473
Tumor
-0.2
147
Tumor
-0.2
724
Normal
-0.2
365
Tumor
-0.2
461
Tumor
-0.3
713
Tumor
-0.3
161
Tumor
-0.3
745
Tumor
-0.3
493
Tumor
-0.3
865
Tumor
-0.3
387
Tumor
-0.3
125
Tumor
-0.3
383
Tumor
-0.3
492
Normal
-0.3
814
Normal
-0.3
187
Tumor
-0.4
663
Tumor
-0.4
557
Tumor
-0.4
573
Tumor
-0.4
923
Tumor
-0.4
545
Tumor
-0.5
817
Tumor
-0.5
563
Tumor
-0.5
447
Tumor
-0.5
331
Tumor
-0.5
351
Tumor
-0.6
413
Tumor
-0.6
421
Tumor
-0.6
137
Tumor
-0.6
917
Tumor
-0.6
375
Tumor
-0.6
391
Tumor
-0.6
943
Tumor
-0.7
527
Tumor
-0.7
395
Tumor
-0.7
951
Tumor
-0.7
343
Tumor
-0.8
297
Tumor
-0.8
957
Tumor
-0.8
467
Tumor
-0.8
411
Tumor
-0.8
953
Tumor
-0.8
671
Tumor
-0.9
921
Tumor
-0.9
455
Tumor
-0.9
635
Tumor
-0.9
367
Tumor
-0.9
463
Tumor
-0.9
355
Tumor
-0.9
617
Tumor
-0.9
385
Tumor
-0.9
313
Tumor
-1.0
285
Tumor
-1.0
311
Tumor
-1.0
223
Tumor
-1.0
537
Tumor
-1.1
523
Tumor
-1.1
497
Tumor
-1.1
283
Tumor
-1.1
211
Tumor
-1.2
983
Tumor
-1.2
815
Tumor
-1.2
967
Tumor
-1.3
661
Tumor
-1.5
851
Tumor
-1.5
535
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
