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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF281 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF281 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
268
Normal
3.9
271
Tumor
3.9
231
Tumor
3.8
257
Tumor
3.8
262
Normal
3.7
258
Normal
3.7
123
Tumor
1.4
743
Tumor
1.3
425
Tumor
1.3
957
Tumor
1.1
647
Tumor
1.1
523
Tumor
1.0
737
Tumor
1.0
527
Tumor
1.0
977
Tumor
0.9
411
Tumor
0.9
131
Tumor
0.8
965
Tumor
0.8
817
Tumor
0.8
497
Tumor
0.8
545
Tumor
0.8
863
Tumor
0.7
357
Tumor
0.7
823
Tumor
0.7
343
Tumor
0.7
393
Tumor
0.7
535
Tumor
0.7
517
Tumor
0.7
447
Tumor
0.7
923
Tumor
0.6
431
Tumor
0.6
125
Tumor
0.6
671
Tumor
0.6
477
Tumor
0.6
813
Tumor
0.6
857
Tumor
0.6
573
Tumor
0.6
112
Tumor
0.6
983
Tumor
0.6
777
Tumor
0.6
297
Tumor
0.6
975
Tumor
0.6
865
Tumor
0.6
211
Tumor
0.6
1025
Tumor
0.5
365
Tumor
0.5
515
Tumor
0.5
635
Tumor
0.5
221
Tumor
0.5
473
Tumor
0.5
385
Tumor
0.5
881
Tumor
0.5
553
Tumor
0.5
571
Tumor
0.5
1043
Tumor
0.5
351
Tumor
0.5
481
Tumor
0.4
283
Tumor
0.4
161
Tumor
0.4
951
Tumor
0.4
557
Tumor
0.4
661
Tumor
0.4
745
Tumor
0.4
912
Normal
0.4
213
Tumor
0.4
665
Tumor
0.4
135
Tumor
0.4
313
Tumor
0.4
877
Tumor
0.4
277
Tumor
0.4
1013
Tumor
0.4
911
Tumor
0.4
921
Tumor
0.4
465
Tumor
0.3
331
Tumor
0.3
227
Tumor
0.3
663
Tumor
0.3
267
Tumor
0.3
533
Tumor
0.3
943
Tumor
0.3
814
Normal
0.3
463
Tumor
0.3
568
Normal
0.3
285
Tumor
0.3
223
Tumor
0.3
443
Tumor
0.3
1031
Tumor
0.3
721
Tumor
0.3
493
Tumor
0.3
913
Tumor
0.3
191
Tumor
0.3
873
Tumor
0.2
467
Tumor
0.2
537
Tumor
0.2
915
Tumor
0.2
1021
Tumor
0.2
461
Tumor
0.2
574
Normal
0.2
366
Normal
0.2
967
Tumor
0.2
724
Normal
0.2
697
Tumor
0.2
572
Normal
0.2
471
Tumor
0.2
261
Tumor
0.2
528
Normal
0.2
727
Tumor
0.2
755
Tumor
0.2
341
Tumor
0.2
884
Normal
0.2
1041
Tumor
0.2
487
Tumor
0.2
883
Tumor
0.2
554
Normal
0.2
567
Tumor
0.2
963
Tumor
0.2
187
Tumor
0.2
455
Tumor
0.2
713
Tumor
0.2
867
Tumor
0.2
171
Tumor
0.1
558
Normal
0.1
114
Normal
0.1
695
Tumor
0.1
851
Tumor
0.1
451
Tumor
0.1
917
Tumor
0.1
483
Tumor
0.1
944
Normal
0.1
498
Normal
0.1
433
Tumor
0.1
534
Normal
0.1
376
Normal
0.1
445
Tumor
0.1
388
Normal
0.1
428
Normal
0.1
1032
Normal
0.1
1046
Normal
0.1
564
Normal
0.1
478
Normal
0.1
126
Normal
0.1
124
Normal
0.1
311
Tumor
0.1
698
Normal
0.1
615
Tumor
0.1
722
Normal
0.1
111
Normal
0.1
955
Tumor
0.1
426
Normal
0.1
563
Tumor
0.1
484
Normal
0.1
546
Normal
0.1
862
Normal
0.1
464
Normal
0.1
128
Normal
0.1
113
Tumor
0.1
882
Normal
0.1
861
Tumor
0.1
641
Tumor
0.1
355
Tumor
0.1
1022
Normal
0.1
878
Normal
0.0
786
Normal
0.0
1027
Tumor
0.0
954
Normal
0.0
953
Tumor
0.0
472
Normal
0.0
785
Tumor
0.0
494
Normal
0.0
482
Normal
0.0
968
Normal
0.0
525
Tumor
0.0
394
Normal
0.0
462
Normal
0.0
1042
Normal
0.0
384
Normal
0.0
424
Normal
0.0
368
Normal
0.0
491
Tumor
0.0
672
Normal
0.0
741
Tumor
0.0
468
Normal
0.0
868
Normal
0.0
664
Normal
0.0
474
Normal
0.0
742
Normal
0.0
636
Normal
0.0
866
Normal
0.0
272
Normal
0.0
186
Normal
0.0
127
Tumor
0.0
715
Tumor
0.0
938
Normal
0.0
648
Normal
0.0
452
Normal
0.0
466
Normal
0.0
714
Normal
0.0
362
Normal
0.0
456
Normal
0.0
286
Normal
0.0
387
Tumor
0.0
922
Normal
0.0
744
Normal
0.0
147
Tumor
0.0
422
Normal
0.0
1028
Normal
0.0
728
Normal
0.0
916
Normal
0.0
148
Normal
-0.1
427
Tumor
-0.1
284
Normal
-0.1
1016
Normal
-0.1
956
Normal
-0.1
232
Normal
-0.1
617
Tumor
-0.1
423
Tumor
-0.1
852
Normal
-0.1
864
Normal
-0.1
925
Tumor
-0.1
1026
Normal
-0.1
414
Normal
-0.1
538
Normal
-0.1
146
Normal
-0.1
818
Normal
-0.1
666
Normal
-0.1
514
Normal
-0.1
1014
Normal
-0.1
746
Normal
-0.1
391
Tumor
-0.1
686
Normal
-0.1
448
Normal
-0.1
966
Normal
-0.1
874
Normal
-0.1
383
Tumor
-0.1
952
Normal
-0.1
978
Normal
-0.1
716
Normal
-0.1
518
Normal
-0.1
392
Normal
-0.1
958
Normal
-0.1
386
Normal
-0.1
188
Normal
-0.1
413
Tumor
-0.1
136
Normal
-0.1
132
Normal
-0.1
616
Normal
-0.1
858
Normal
-0.1
142
Normal
-0.1
982
Normal
-0.1
224
Normal
-0.1
926
Normal
-0.1
984
Normal
-0.1
367
Tumor
-0.1
492
Normal
-0.1
488
Normal
-0.1
662
Normal
-0.1
816
Normal
-0.1
312
Normal
-0.1
354
Normal
-0.1
618
Normal
-0.1
361
Tumor
-0.1
756
Normal
-0.1
924
Normal
-0.1
137
Tumor
-0.2
536
Normal
-0.2
513
Tumor
-0.2
815
Tumor
-0.2
358
Normal
-0.2
914
Normal
-0.2
162
Normal
-0.2
172
Normal
-0.2
395
Tumor
-0.2
364
Normal
-0.2
824
Normal
-0.2
228
Normal
-0.2
222
Normal
-0.2
696
Normal
-0.2
212
Normal
-0.2
195
Tumor
-0.2
918
Normal
-0.2
723
Tumor
-0.2
685
Tumor
-0.2
214
Normal
-0.2
1044
Normal
-0.2
396
Normal
-0.2
314
Normal
-0.2
778
Normal
-0.2
196
Normal
-0.2
1045
Tumor
-0.2
344
Normal
-0.2
352
Normal
-0.2
141
Tumor
-0.2
138
Normal
-0.2
642
Normal
-0.3
628
Normal
-0.3
738
Normal
-0.3
416
Normal
-0.3
627
Tumor
-0.3
937
Tumor
-0.3
415
Tumor
-0.3
375
Tumor
-0.3
217
Tumor
-0.3
278
Normal
-0.3
421
Tumor
-0.3
964
Normal
-0.3
145
Tumor
-0.3
412
Normal
-0.3
1015
Tumor
-0.3
192
Normal
-0.3
298
Normal
-0.3
327
Tumor
-0.3
185
Tumor
-0.3
353
Tumor
-0.3
356
Normal
-0.3
516
Normal
-0.3
981
Tumor
-0.3
524
Normal
-0.3
976
Normal
-0.3
526
Normal
-0.4
328
Normal
-0.4
342
Normal
-0.4
444
Normal
-0.4
218
Normal
-0.4
435
Tumor
-0.4
446
Normal
-0.4
332
Normal
-0.4
436
Normal
-0.5
432
Normal
-0.6
363
Tumor
-0.6
434
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
