MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.1 nTPM
HPA Brain:10.0 nTPM
GTEx:2.1 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:4.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.2
2411 Female, age 72, unknown 9.2
1830 Male, age 51, unknown 9.1
1833 Male, age 53, unknown 8.7
1870 Female, age 42, unknown 8.6
2219 Male, age 76, both hemispheres 8.6
1827 Male, age 72, unknown 8.4
2828 Female, age 72, unknown 7.9
2666 Male, age 74, left hemisphere 7.7
2019 Male, age 18, unknown 7.0
2586 Male, age 75, left hemisphere 6.3
Dorsal raphe nucleus
nTPM: 9.1
2016 Female, age 72, unknown 9.8
2298 Female, age 72, unknown 9.4
2750 Male, age 76, both hemispheres 9.0
2047 Male, age 72, unknown 8.9
1828 Male, age 53, unknown 8.2
Inferior colliculus
nTPM: 8.9
2097 Female, age 72, unknown 9.9
1848 Female, age 42, unknown 9.2
1890 Male, age 53, unknown 8.5
2849 Male, age 72, unknown 8.1
Median raphe nucleus
nTPM: 9.2
2220 Male, age 76, midline 9.2
Periaquaductal grey, anterior
nTPM: 10.0
1947 Male, age 18, unknown 12.2
2502 Female, age 75, unknown 9.6
1795 Male, age 51, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 9.1
1840 Male, age 53, unknown 9.5
2850 Male, age 76, both hemispheres 9.3
2464 Female, age 72, unknown 8.9
1831 Male, age 72, unknown 8.5
Periaquaductal grey, lateral
nTPM: 9.0
2272 Male, age 74, both hemispheres 9.5
2140 Male, age 76, both hemispheres 9.4
2053 Male, age 18, unknown 8.0
Pretectal area
nTPM: 8.6
1815 Male, age 53, unknown 9.6
2316 Male, age 76, right hemisphere 9.6
2273 Male, age 74, both hemispheres 9.5
1816 Male, age 51, unknown 8.6
2224 Female, age 72, unknown 8.6
2825 Male, age 18, unknown 8.4
1944 Female, age 72, unknown 8.3
2007 Male, age 72, unknown 8.3
2667 Female, age 75, unknown 8.3
1817 Female, age 42, unknown 7.9
2407 Male, age 75, both hemispheres 7.4
Red nucleus
nTPM: 8.5
1954 Female, age 42, unknown 10.0
2823 Male, age 76, right hemisphere 9.6
1904 Male, age 53, unknown 9.0
1821 Female, age 72, unknown 8.9
2503 Female, age 72, unknown 8.7
2725 Female, age 75, unknown 8.5
2769 Male, age 72, unknown 8.4
1865 Male, age 51, unknown 8.3
2227 Male, age 72, unknown 8.2
2785 Male, age 18, unknown 8.1
2584 Male, age 75, left hemisphere 7.6
2588 Male, age 74, left hemisphere 6.3
Substantia nigra
nTPM: 8.4
2241 Male, age 72, unknown 9.6
1889 Female, age 72, unknown 9.3
2409 Female, age 72, unknown 9.2
1851 Male, age 51, unknown 8.6
2590 Female, age 75, unknown 8.3
1916 Female, age 42, unknown 8.0
2699 Male, age 18, unknown 8.0
2665 Male, age 74, both hemispheres 7.8
2583 Male, age 75, right hemisphere 7.6
1941 Male, age 53, unknown 7.5
Superior colliculus
nTPM: 8.8
2261 Male, age 18, unknown 10.0
1913 Female, age 42, unknown 9.6
1995 Male, age 72, unknown 9.3
2668 Female, age 75, unknown 9.2
1839 Male, age 51, unknown 8.7
1895 Male, age 76, right hemisphere 8.5
2087 Female, age 72, unknown 8.5
1796 Male, age 53, unknown 8.3
2587 Male, age 74, left hemisphere 8.3
2664 Male, age 75, both hemispheres 7.4
Ventral tegmental area
nTPM: 8.4
1942 Male, age 51, unknown 8.9
2218 Male, age 76, both hemispheres 8.8
2021 Male, age 53, unknown 8.5
2410 Female, age 72, unknown 8.5
2223 Female, age 72, unknown 8.3
1915 Female, age 42, unknown 7.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.1
Samples: 139

Max nTPM: 4.1
Min nTPM: 1.0
Std nTPM: 0.5
Median nTPM: 2.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 4.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 3.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 3.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 3.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 3.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 2.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 2.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 15.7
Min nTPM: 14.2
Sample A Female 14.8
Sample B Female 15.7
Sample C Male 14.2
Sample D Male 14.6
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.2
Sample A Female 15.6
Sample B Female 15.3
Sample C Male 11.2
Sample D Male 11.8
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 14.9
Min nTPM: 13.0
Sample B Female 14.9
Sample C Male 14.0
Sample D Male 13.0
Superior colliculi
nTPM: 14.8
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.4
Sample A Female 14.3
Sample B Female 17.3
Sample C Male 14.1
Sample D Male 13.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.0
Sample A Male 4.0
Sample B Male 4.8
Sample C Female 4.6
Sample D Female 4.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
78534508 Antisense, RP_070620_01_B01, Mouse strain C57BL/6J (56 days, male) 0.1

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