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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FUBP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FUBP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.0
497
Tumor
1.0
517
Tumor
1.0
951
Tumor
0.9
131
Tumor
0.9
1021
Tumor
0.8
743
Tumor
0.8
425
Tumor
0.8
355
Tumor
0.8
535
Tumor
0.8
661
Tumor
0.8
411
Tumor
0.7
537
Tumor
0.7
957
Tumor
0.7
967
Tumor
0.7
525
Tumor
0.7
427
Tumor
0.6
123
Tumor
0.6
161
Tumor
0.6
523
Tumor
0.6
477
Tumor
0.6
545
Tumor
0.6
283
Tumor
0.6
493
Tumor
0.6
487
Tumor
0.6
817
Tumor
0.6
385
Tumor
0.6
975
Tumor
0.5
724
Normal
0.5
865
Tumor
0.5
925
Tumor
0.5
533
Tumor
0.5
943
Tumor
0.5
351
Tumor
0.5
367
Tumor
0.5
571
Tumor
0.5
211
Tumor
0.5
341
Tumor
0.5
883
Tumor
0.4
467
Tumor
0.4
391
Tumor
0.4
413
Tumor
0.4
727
Tumor
0.4
814
Normal
0.4
557
Tumor
0.4
663
Tumor
0.4
695
Tumor
0.4
313
Tumor
0.4
387
Tumor
0.4
737
Tumor
0.4
112
Tumor
0.3
647
Tumor
0.3
297
Tumor
0.3
813
Tumor
0.3
685
Tumor
0.3
1041
Tumor
0.3
977
Tumor
0.3
135
Tumor
0.3
861
Tumor
0.3
917
Tumor
0.3
923
Tumor
0.3
921
Tumor
0.3
563
Tumor
0.3
383
Tumor
0.3
665
Tumor
0.3
741
Tumor
0.3
937
Tumor
0.3
213
Tumor
0.3
473
Tumor
0.3
471
Tumor
0.3
375
Tumor
0.2
433
Tumor
0.2
515
Tumor
0.2
755
Tumor
0.2
567
Tumor
0.2
573
Tumor
0.2
877
Tumor
0.2
231
Tumor
0.2
455
Tumor
0.2
527
Tumor
0.2
443
Tumor
0.2
1013
Tumor
0.2
431
Tumor
0.2
171
Tumor
0.2
867
Tumor
0.2
1031
Tumor
0.2
1015
Tumor
0.2
343
Tumor
0.2
277
Tumor
0.2
777
Tumor
0.2
185
Tumor
0.2
478
Normal
0.2
483
Tumor
0.2
357
Tumor
0.1
823
Tumor
0.1
963
Tumor
0.1
911
Tumor
0.1
715
Tumor
0.1
635
Tumor
0.1
447
Tumor
0.1
435
Tumor
0.1
492
Normal
0.1
1025
Tumor
0.1
498
Normal
0.1
191
Tumor
0.1
953
Tumor
0.1
524
Normal
0.1
873
Tumor
0.1
913
Tumor
0.1
745
Tumor
0.1
113
Tumor
0.1
538
Normal
0.1
145
Tumor
0.1
881
Tumor
0.1
721
Tumor
0.1
983
Tumor
0.1
187
Tumor
0.1
395
Tumor
0.1
421
Tumor
0.1
713
Tumor
0.0
1027
Tumor
0.0
415
Tumor
0.0
863
Tumor
0.0
461
Tumor
0.0
671
Tumor
0.0
491
Tumor
0.0
536
Normal
0.0
311
Tumor
0.0
617
Tumor
0.0
361
Tumor
0.0
916
Normal
0.0
141
Tumor
0.0
857
Tumor
0.0
127
Tumor
0.0
257
Tumor
0.0
915
Tumor
0.0
271
Tumor
0.0
966
Normal
0.0
217
Tumor
0.0
384
Normal
0.0
1045
Tumor
0.0
463
Tumor
0.0
955
Tumor
0.0
267
Tumor
0.0
444
Normal
-0.1
954
Normal
-0.1
331
Tumor
-0.1
146
Normal
-0.1
553
Tumor
-0.1
968
Normal
-0.1
1043
Tumor
-0.1
434
Normal
-0.1
465
Tumor
-0.1
672
Normal
-0.1
686
Normal
-0.1
268
Normal
-0.1
353
Tumor
-0.1
978
Normal
-0.1
984
Normal
-0.1
697
Tumor
-0.1
958
Normal
-0.1
516
Normal
-0.1
472
Normal
-0.1
224
Normal
-0.1
223
Tumor
-0.1
866
Normal
-0.1
981
Tumor
-0.1
445
Tumor
-0.1
785
Tumor
-0.1
744
Normal
-0.1
262
Normal
-0.1
126
Normal
-0.1
716
Normal
-0.1
964
Normal
-0.1
142
Normal
-0.1
976
Normal
-0.1
451
Tumor
-0.1
554
Normal
-0.1
662
Normal
-0.1
1028
Normal
-0.1
924
Normal
-0.1
884
Normal
-0.2
558
Normal
-0.2
488
Normal
-0.2
1014
Normal
-0.2
192
Normal
-0.2
376
Normal
-0.2
494
Normal
-0.2
664
Normal
-0.2
423
Tumor
-0.2
918
Normal
-0.2
327
Tumor
-0.2
362
Normal
-0.2
982
Normal
-0.2
641
Tumor
-0.2
874
Normal
-0.2
628
Normal
-0.2
284
Normal
-0.2
778
Normal
-0.2
393
Tumor
-0.2
484
Normal
-0.2
864
Normal
-0.2
528
Normal
-0.2
938
Normal
-0.2
868
Normal
-0.2
738
Normal
-0.2
912
Normal
-0.2
352
Normal
-0.2
364
Normal
-0.2
412
Normal
-0.2
756
Normal
-0.2
448
Normal
-0.2
481
Tumor
-0.2
786
Normal
-0.2
878
Normal
-0.2
852
Normal
-0.2
698
Normal
-0.2
462
Normal
-0.2
513
Tumor
-0.2
312
Normal
-0.2
1016
Normal
-0.2
546
Normal
-0.2
386
Normal
-0.2
474
Normal
-0.2
518
Normal
-0.2
416
Normal
-0.2
696
Normal
-0.2
952
Normal
-0.2
212
Normal
-0.2
926
Normal
-0.2
526
Normal
-0.2
392
Normal
-0.2
272
Normal
-0.2
328
Normal
-0.2
572
Normal
-0.2
714
Normal
-0.2
1026
Normal
-0.2
862
Normal
-0.2
666
Normal
-0.2
723
Tumor
-0.2
232
Normal
-0.2
728
Normal
-0.2
851
Tumor
-0.3
534
Normal
-0.3
396
Normal
-0.3
944
Normal
-0.3
356
Normal
-0.3
1044
Normal
-0.3
648
Normal
-0.3
1032
Normal
-0.3
482
Normal
-0.3
365
Tumor
-0.3
922
Normal
-0.3
261
Tumor
-0.3
882
Normal
-0.3
568
Normal
-0.3
742
Normal
-0.3
366
Normal
-0.3
636
Normal
-0.3
818
Normal
-0.3
124
Normal
-0.3
258
Normal
-0.3
188
Normal
-0.3
914
Normal
-0.3
132
Normal
-0.3
138
Normal
-0.3
1022
Normal
-0.3
136
Normal
-0.3
228
Normal
-0.3
446
Normal
-0.3
111
Normal
-0.3
344
Normal
-0.3
722
Normal
-0.3
574
Normal
-0.3
286
Normal
-0.3
858
Normal
-0.3
466
Normal
-0.3
627
Tumor
-0.3
616
Normal
-0.3
746
Normal
-0.3
468
Normal
-0.3
114
Normal
-0.3
514
Normal
-0.3
332
Normal
-0.3
218
Normal
-0.3
1046
Normal
-0.3
354
Normal
-0.4
137
Tumor
-0.4
298
Normal
-0.4
816
Normal
-0.4
422
Normal
-0.4
452
Normal
-0.4
956
Normal
-0.4
436
Normal
-0.4
615
Tumor
-0.4
128
Normal
-0.4
195
Tumor
-0.4
147
Tumor
-0.4
368
Normal
-0.4
278
Normal
-0.4
214
Normal
-0.4
1042
Normal
-0.4
456
Normal
-0.4
642
Normal
-0.4
564
Normal
-0.4
432
Normal
-0.4
815
Tumor
-0.4
196
Normal
-0.4
227
Tumor
-0.4
824
Normal
-0.4
394
Normal
-0.4
148
Normal
-0.4
162
Normal
-0.4
424
Normal
-0.4
221
Tumor
-0.4
358
Normal
-0.4
342
Normal
-0.4
464
Normal
-0.4
426
Normal
-0.5
314
Normal
-0.5
618
Normal
-0.5
388
Normal
-0.5
172
Normal
-0.5
414
Normal
-0.5
186
Normal
-0.5
428
Normal
-0.5
222
Normal
-0.5
125
Tumor
-0.5
363
Tumor
-0.6
285
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
