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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OMA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OMA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
231
Samples
Sample
Description
TPM
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.4
911
Tumor
1.3
487
Tumor
1.2
231
Tumor
1.1
627
Tumor
1.0
513
Tumor
1.0
393
Tumor
0.9
1045
Tumor
0.9
615
Tumor
0.8
925
Tumor
0.8
465
Tumor
0.8
451
Tumor
0.7
755
Tumor
0.6
515
Tumor
0.6
172
Normal
0.6
477
Tumor
0.6
563
Tumor
0.5
913
Tumor
0.5
395
Tumor
0.5
786
Normal
0.5
756
Normal
0.5
461
Tumor
0.5
557
Tumor
0.5
738
Normal
0.5
186
Normal
0.5
915
Tumor
0.5
746
Normal
0.5
554
Normal
0.4
257
Tumor
0.4
695
Tumor
0.4
955
Tumor
0.4
861
Tumor
0.4
857
Tumor
0.4
425
Tumor
0.4
745
Tumor
0.4
922
Normal
0.4
341
Tumor
0.4
162
Normal
0.4
526
Normal
0.4
481
Tumor
0.4
924
Normal
0.4
473
Tumor
0.4
984
Normal
0.4
686
Normal
0.4
1015
Tumor
0.4
344
Normal
0.4
912
Normal
0.4
423
Tumor
0.4
492
Normal
0.4
195
Tumor
0.3
327
Tumor
0.3
484
Normal
0.3
714
Normal
0.3
882
Normal
0.3
436
Normal
0.3
741
Tumor
0.3
862
Normal
0.3
1046
Normal
0.3
824
Normal
0.3
818
Normal
0.3
635
Tumor
0.3
514
Normal
0.3
1026
Normal
0.3
474
Normal
0.3
968
Normal
0.3
858
Normal
0.3
313
Tumor
0.3
937
Tumor
0.3
1022
Normal
0.3
981
Tumor
0.3
191
Tumor
0.3
342
Normal
0.3
448
Normal
0.3
111
Normal
0.3
636
Normal
0.3
685
Tumor
0.3
1032
Normal
0.3
558
Normal
0.3
778
Normal
0.3
864
Normal
0.3
722
Normal
0.3
518
Normal
0.3
424
Normal
0.3
728
Normal
0.3
411
Tumor
0.3
564
Normal
0.2
1014
Normal
0.2
328
Normal
0.2
528
Normal
0.2
365
Tumor
0.2
884
Normal
0.2
666
Normal
0.2
851
Tumor
0.2
426
Normal
0.2
171
Tumor
0.2
852
Normal
0.2
488
Normal
0.2
128
Normal
0.2
952
Normal
0.2
286
Normal
0.2
533
Tumor
0.2
1028
Normal
0.2
874
Normal
0.2
698
Normal
0.2
868
Normal
0.2
412
Normal
0.2
534
Normal
0.2
452
Normal
0.2
716
Normal
0.2
777
Tumor
0.2
964
Normal
0.2
642
Normal
0.2
446
Normal
0.2
392
Normal
0.2
113
Tumor
0.2
472
Normal
0.2
572
Normal
0.2
616
Normal
0.2
466
Normal
0.2
493
Tumor
0.2
232
Normal
0.2
914
Normal
0.2
648
Normal
0.2
535
Tumor
0.2
1042
Normal
0.2
212
Normal
0.2
665
Tumor
0.2
568
Normal
0.2
228
Normal
0.2
376
Normal
0.1
414
Normal
0.1
494
Normal
0.1
744
Normal
0.1
261
Tumor
0.1
1016
Normal
0.1
878
Normal
0.1
571
Tumor
0.1
785
Tumor
0.1
124
Normal
0.1
567
Tumor
0.1
628
Normal
0.1
951
Tumor
0.1
574
Normal
0.1
188
Normal
0.1
462
Normal
0.1
258
Normal
0.1
672
Normal
0.1
647
Tumor
0.1
982
Normal
0.1
723
Tumor
0.1
141
Tumor
0.1
816
Normal
0.1
352
Normal
0.1
618
Normal
0.1
284
Normal
0.1
696
Normal
0.1
538
Normal
0.1
918
Normal
0.1
1021
Tumor
0.1
978
Normal
0.1
218
Normal
0.1
524
Normal
0.1
866
Normal
0.0
428
Normal
0.0
278
Normal
0.0
268
Normal
0.0
214
Normal
0.0
944
Normal
0.0
364
Normal
0.0
422
Normal
0.0
516
Normal
0.0
976
Normal
0.0
957
Tumor
0.0
137
Tumor
0.0
361
Tumor
0.0
358
Normal
0.0
136
Normal
0.0
873
Tumor
0.0
187
Tumor
0.0
222
Normal
0.0
713
Tumor
0.0
468
Normal
0.0
314
Normal
0.0
148
Normal
0.0
966
Normal
0.0
956
Normal
0.0
138
Normal
0.0
916
Normal
0.0
433
Tumor
0.0
142
Normal
0.0
482
Normal
0.0
135
Tumor
0.0
537
Tumor
0.0
383
Tumor
-0.1
262
Normal
-0.1
356
Normal
-0.1
742
Normal
-0.1
954
Normal
-0.1
332
Normal
-0.1
483
Tumor
-0.1
737
Tumor
-0.1
298
Normal
-0.1
721
Tumor
-0.1
938
Normal
-0.1
223
Tumor
-0.1
926
Normal
-0.1
224
Normal
-0.1
883
Tumor
-0.1
467
Tumor
-0.1
1044
Normal
-0.1
114
Normal
-0.1
865
Tumor
-0.1
132
Normal
-0.1
431
Tumor
-0.1
664
Normal
-0.1
525
Tumor
-0.1
353
Tumor
-0.1
491
Tumor
-0.1
421
Tumor
-0.1
1025
Tumor
-0.1
354
Normal
-0.1
362
Normal
-0.1
724
Normal
-0.1
536
Normal
-0.1
396
Normal
-0.1
958
Normal
-0.2
527
Tumor
-0.2
456
Normal
-0.2
573
Tumor
-0.2
145
Tumor
-0.2
146
Normal
-0.2
867
Tumor
-0.2
185
Tumor
-0.2
386
Normal
-0.2
498
Normal
-0.2
977
Tumor
-0.2
272
Normal
-0.2
727
Tumor
-0.2
1043
Tumor
-0.2
478
Normal
-0.2
546
Normal
-0.2
443
Tumor
-0.2
297
Tumor
-0.2
662
Normal
-0.2
391
Tumor
-0.2
823
Tumor
-0.2
196
Normal
-0.2
416
Normal
-0.2
434
Normal
-0.2
415
Tumor
-0.2
967
Tumor
-0.3
366
Normal
-0.3
523
Tumor
-0.3
432
Normal
-0.3
394
Normal
-0.3
126
Normal
-0.3
388
Normal
-0.3
471
Tumor
-0.3
953
Tumor
-0.3
368
Normal
-0.3
125
Tumor
-0.3
227
Tumor
-0.3
464
Normal
-0.3
123
Tumor
-0.3
697
Tumor
-0.3
267
Tumor
-0.3
1013
Tumor
-0.3
943
Tumor
-0.3
715
Tumor
-0.4
863
Tumor
-0.4
445
Tumor
-0.4
497
Tumor
-0.4
384
Normal
-0.4
545
Tumor
-0.4
355
Tumor
-0.4
444
Normal
-0.4
617
Tumor
-0.4
213
Tumor
-0.4
357
Tumor
-0.4
217
Tumor
-0.4
663
Tumor
-0.4
553
Tumor
-0.4
161
Tumor
-0.4
1027
Tumor
-0.4
363
Tumor
-0.4
375
Tumor
-0.5
112
Tumor
-0.5
814
Normal
-0.5
965
Tumor
-0.5
921
Tumor
-0.5
447
Tumor
-0.5
413
Tumor
-0.5
923
Tumor
-0.5
435
Tumor
-0.6
367
Tumor
-0.6
221
Tumor
-0.6
517
Tumor
-0.6
127
Tumor
-0.6
192
Normal
-0.6
387
Tumor
-0.6
312
Normal
-0.6
343
Tumor
-0.7
1031
Tumor
-0.7
881
Tumor
-0.7
641
Tumor
-0.7
813
Tumor
-0.7
277
Tumor
-0.7
975
Tumor
-0.7
351
Tumor
-0.7
427
Tumor
-0.8
385
Tumor
-0.8
963
Tumor
-0.9
147
Tumor
-0.9
743
Tumor
-0.9
877
Tumor
-0.9
671
Tumor
-1.0
661
Tumor
-1.0
331
Tumor
-1.0
983
Tumor
-1.0
211
Tumor
-1.0
271
Tumor
-1.1
815
Tumor
-1.1
311
Tumor
-1.1
455
Tumor
-1.1
917
Tumor
-1.1
463
Tumor
-1.1
285
Tumor
-1.2
817
Tumor
-1.3
283
Tumor
-1.4
131
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
