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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
136.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
94.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
90.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
88.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
86.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
84.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
81.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
81.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
75.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
71.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
70.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
68.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
68.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
67.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
67.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
66.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
66.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
64.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
63.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
63.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
62.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
62.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
62.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
61.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
61.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
60.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
60.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
60.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
58.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
57.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
57.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
57.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
55.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
55.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
55.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
54.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
54.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
54.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
53.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
53.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
53.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
51.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
50.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
50.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
49.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
48.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
47.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
47.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
47.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
47.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
47.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
46.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
45.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
42.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
41.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
41.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
40.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
39.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
37.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
35.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
33.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.2
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
91.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
74.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
71.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
65.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
54.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
53.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
47.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
43.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
43.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
38.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.2
627
Tumor
0.8
171
Tumor
0.8
231
Tumor
0.8
1027
Tumor
0.7
615
Tumor
0.6
365
Tumor
0.6
192
Normal
0.6
393
Tumor
0.6
741
Tumor
0.6
313
Tumor
0.5
332
Normal
0.5
222
Normal
0.5
383
Tumor
0.5
387
Tumor
0.5
423
Tumor
0.5
298
Normal
0.5
314
Normal
0.5
342
Normal
0.5
451
Tumor
0.5
368
Normal
0.5
635
Tumor
0.4
414
Normal
0.4
111
Normal
0.4
911
Tumor
0.4
433
Tumor
0.4
277
Tumor
0.4
195
Tumor
0.4
617
Tumor
0.4
573
Tumor
0.4
367
Tumor
0.4
465
Tumor
0.4
132
Normal
0.4
642
Normal
0.4
114
Normal
0.4
395
Tumor
0.4
618
Normal
0.4
361
Tumor
0.4
218
Normal
0.4
278
Normal
0.4
636
Normal
0.4
394
Normal
0.4
388
Normal
0.4
354
Normal
0.4
574
Normal
0.4
391
Tumor
0.4
375
Tumor
0.4
426
Normal
0.4
146
Normal
0.4
214
Normal
0.3
123
Tumor
0.3
186
Normal
0.3
112
Tumor
0.3
777
Tumor
0.3
444
Normal
0.3
384
Normal
0.3
185
Tumor
0.3
436
Normal
0.3
413
Tumor
0.3
353
Tumor
0.3
162
Normal
0.3
366
Normal
0.3
424
Normal
0.3
425
Tumor
0.3
188
Normal
0.3
141
Tumor
0.3
268
Normal
0.3
172
Normal
0.3
312
Normal
0.3
421
Tumor
0.3
344
Normal
0.3
137
Tumor
0.3
138
Normal
0.3
392
Normal
0.3
358
Normal
0.3
124
Normal
0.3
422
Normal
0.3
628
Normal
0.3
362
Normal
0.3
161
Tumor
0.3
446
Normal
0.3
452
Normal
0.3
434
Normal
0.3
456
Normal
0.3
267
Tumor
0.3
662
Normal
0.3
196
Normal
0.3
616
Normal
0.3
136
Normal
0.3
567
Tumor
0.3
258
Normal
0.3
427
Tumor
0.3
213
Tumor
0.3
261
Tumor
0.3
563
Tumor
0.2
217
Tumor
0.2
145
Tumor
0.2
396
Normal
0.2
665
Tumor
0.2
672
Normal
0.2
376
Normal
0.2
661
Tumor
0.2
126
Normal
0.2
257
Tumor
0.2
664
Normal
0.2
386
Normal
0.2
648
Normal
0.2
666
Normal
0.2
128
Normal
0.2
685
Tumor
0.2
724
Normal
0.2
148
Normal
0.2
432
Normal
0.2
744
Normal
0.2
468
Normal
0.2
343
Tumor
0.2
1045
Tumor
0.2
513
Tumor
0.2
695
Tumor
0.2
113
Tumor
0.2
262
Normal
0.2
818
Normal
0.2
568
Normal
0.2
351
Tumor
0.2
445
Tumor
0.2
912
Normal
0.2
564
Normal
0.2
464
Normal
0.2
357
Tumor
0.2
428
Normal
0.1
1021
Tumor
0.1
443
Tumor
0.1
965
Tumor
0.1
813
Tumor
0.1
341
Tumor
0.1
786
Normal
0.1
352
Normal
0.1
1013
Tumor
0.1
913
Tumor
0.1
467
Tumor
0.1
272
Normal
0.1
824
Normal
0.1
814
Normal
0.1
925
Tumor
0.1
461
Tumor
0.1
466
Normal
0.1
232
Normal
0.1
863
Tumor
0.1
874
Normal
0.1
297
Tumor
0.1
331
Tumor
0.1
884
Normal
0.1
435
Tumor
0.1
727
Tumor
0.1
125
Tumor
0.1
147
Tumor
0.0
981
Tumor
0.0
867
Tumor
0.0
448
Normal
0.0
756
Normal
0.0
816
Normal
0.0
557
Tumor
0.0
431
Tumor
0.0
868
Normal
0.0
223
Tumor
0.0
742
Normal
0.0
1044
Normal
0.0
882
Normal
0.0
515
Tumor
0.0
862
Normal
0.0
135
Tumor
0.0
858
Normal
0.0
883
Tumor
0.0
663
Tumor
0.0
463
Tumor
0.0
1026
Normal
0.0
572
Normal
0.0
866
Normal
0.0
1028
Normal
0.0
1046
Normal
0.0
558
Normal
0.0
746
Normal
0.0
641
Tumor
0.0
977
Tumor
0.0
755
Tumor
0.0
723
Tumor
0.0
698
Normal
0.0
462
Normal
0.0
528
Normal
0.0
127
Tumor
0.0
738
Normal
0.0
286
Normal
0.0
284
Normal
-0.1
142
Normal
-0.1
497
Tumor
-0.1
416
Normal
-0.1
914
Normal
-0.1
1016
Normal
-0.1
857
Tumor
-0.1
943
Tumor
-0.1
778
Normal
-0.1
915
Tumor
-0.1
327
Tumor
-0.1
878
Normal
-0.1
721
Tumor
-0.1
864
Normal
-0.1
671
Tumor
-0.1
924
Normal
-0.1
785
Tumor
-0.1
212
Normal
-0.1
976
Normal
-0.1
968
Normal
-0.1
852
Normal
-0.1
224
Normal
-0.1
191
Tumor
-0.1
1022
Normal
-0.1
923
Tumor
-0.1
487
Tumor
-0.1
482
Normal
-0.1
1042
Normal
-0.1
311
Tumor
-0.1
534
Normal
-0.1
851
Tumor
-0.1
481
Tumor
-0.1
411
Tumor
-0.1
861
Tumor
-0.1
956
Normal
-0.1
967
Tumor
-0.1
221
Tumor
-0.1
722
Normal
-0.1
944
Normal
-0.2
714
Normal
-0.2
472
Normal
-0.2
728
Normal
-0.2
546
Normal
-0.2
385
Tumor
-0.2
536
Normal
-0.2
745
Tumor
-0.2
356
Normal
-0.2
964
Normal
-0.2
227
Tumor
-0.2
984
Normal
-0.2
982
Normal
-0.2
955
Tumor
-0.2
716
Normal
-0.2
713
Tumor
-0.2
954
Normal
-0.2
514
Normal
-0.2
737
Tumor
-0.2
477
Tumor
-0.2
526
Normal
-0.2
647
Tumor
-0.2
488
Normal
-0.2
815
Tumor
-0.2
966
Normal
-0.2
916
Normal
-0.2
478
Normal
-0.2
1032
Normal
-0.2
187
Tumor
-0.2
228
Normal
-0.2
527
Tumor
-0.3
958
Normal
-0.3
554
Normal
-0.3
516
Normal
-0.3
881
Tumor
-0.3
455
Tumor
-0.3
922
Normal
-0.3
918
Normal
-0.3
696
Normal
-0.3
328
Normal
-0.3
283
Tumor
-0.3
474
Normal
-0.3
271
Tumor
-0.3
1014
Normal
-0.3
686
Normal
-0.3
498
Normal
-0.3
877
Tumor
-0.3
697
Tumor
-0.3
926
Normal
-0.3
952
Normal
-0.3
491
Tumor
-0.3
1015
Tumor
-0.3
525
Tumor
-0.3
715
Tumor
-0.3
938
Normal
-0.3
978
Normal
-0.3
917
Tumor
-0.3
412
Normal
-0.3
447
Tumor
-0.3
364
Normal
-0.4
953
Tumor
-0.4
518
Normal
-0.4
865
Tumor
-0.4
285
Tumor
-0.4
538
Normal
-0.4
743
Tumor
-0.4
493
Tumor
-0.4
873
Tumor
-0.4
963
Tumor
-0.4
937
Tumor
-0.4
492
Normal
-0.4
533
Tumor
-0.5
415
Tumor
-0.5
494
Normal
-0.5
975
Tumor
-0.5
484
Normal
-0.5
517
Tumor
-0.5
1041
Tumor
-0.5
817
Tumor
-0.5
823
Tumor
-0.5
1043
Tumor
-0.5
524
Normal
-0.5
921
Tumor
-0.6
483
Tumor
-0.6
535
Tumor
-0.6
983
Tumor
-0.6
545
Tumor
-0.6
355
Tumor
-0.6
363
Tumor
-0.6
211
Tumor
-0.6
951
Tumor
-0.6
471
Tumor
-0.7
131
Tumor
-0.7
473
Tumor
-0.7
1031
Tumor
-0.7
1025
Tumor
-0.7
523
Tumor
-0.9
537
Tumor
-1.0
957
Tumor
-1.1
553
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.