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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM82 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
101.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
98.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
85.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
76.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
73.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
63.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
62.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
61.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
56.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
49.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
48.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
46.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
44.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
41.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM82 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
62.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
41.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.1
426
Normal
1.0
278
Normal
1.0
744
Normal
1.0
422
Normal
1.0
484
Normal
0.9
636
Normal
0.9
172
Normal
0.9
314
Normal
0.9
435
Tumor
0.9
864
Normal
0.9
424
Normal
0.9
466
Normal
0.8
616
Normal
0.8
618
Normal
0.8
148
Normal
0.8
388
Normal
0.8
564
Normal
0.8
866
Normal
0.8
142
Normal
0.8
1022
Normal
0.8
342
Normal
0.8
568
Normal
0.8
746
Normal
0.8
354
Normal
0.7
572
Normal
0.7
868
Normal
0.7
1042
Normal
0.7
878
Normal
0.7
968
Normal
0.7
642
Normal
0.7
976
Normal
0.7
162
Normal
0.7
414
Normal
0.7
456
Normal
0.7
1016
Normal
0.7
462
Normal
0.7
862
Normal
0.6
452
Normal
0.6
1032
Normal
0.6
232
Normal
0.6
914
Normal
0.6
428
Normal
0.6
114
Normal
0.6
488
Normal
0.6
196
Normal
0.6
362
Normal
0.6
648
Normal
0.6
464
Normal
0.6
423
Tumor
0.6
332
Normal
0.6
981
Tumor
0.6
494
Normal
0.6
816
Normal
0.6
268
Normal
0.6
298
Normal
0.6
446
Normal
0.6
258
Normal
0.5
444
Normal
0.5
824
Normal
0.5
436
Normal
0.5
352
Normal
0.5
228
Normal
0.5
138
Normal
0.5
628
Normal
0.5
482
Normal
0.5
1028
Normal
0.5
416
Normal
0.5
728
Normal
0.5
698
Normal
0.5
738
Normal
0.5
534
Normal
0.5
982
Normal
0.5
396
Normal
0.5
358
Normal
0.5
286
Normal
0.5
448
Normal
0.5
958
Normal
0.5
432
Normal
0.5
1045
Tumor
0.5
111
Normal
0.4
786
Normal
0.4
1014
Normal
0.4
214
Normal
0.4
284
Normal
0.4
964
Normal
0.4
366
Normal
0.4
574
Normal
0.4
513
Tumor
0.4
558
Normal
0.4
222
Normal
0.4
546
Normal
0.4
952
Normal
0.4
874
Normal
0.4
368
Normal
0.4
124
Normal
0.4
944
Normal
0.4
132
Normal
0.4
984
Normal
0.4
492
Normal
0.4
742
Normal
0.4
882
Normal
0.4
722
Normal
0.4
392
Normal
0.4
394
Normal
0.4
186
Normal
0.3
328
Normal
0.3
376
Normal
0.3
356
Normal
0.3
384
Normal
0.3
212
Normal
0.3
468
Normal
0.3
778
Normal
0.3
474
Normal
0.3
262
Normal
0.3
554
Normal
0.3
818
Normal
0.3
955
Tumor
0.3
938
Normal
0.3
714
Normal
0.3
272
Normal
0.3
412
Normal
0.3
912
Normal
0.3
922
Normal
0.3
312
Normal
0.3
966
Normal
0.3
1026
Normal
0.2
365
Tumor
0.2
498
Normal
0.2
664
Normal
0.2
716
Normal
0.2
136
Normal
0.2
852
Normal
0.2
146
Normal
0.2
344
Normal
0.2
723
Tumor
0.2
528
Normal
0.2
514
Normal
0.2
364
Normal
0.2
526
Normal
0.2
672
Normal
0.2
472
Normal
0.2
188
Normal
0.2
924
Normal
0.2
386
Normal
0.2
756
Normal
0.2
361
Tumor
0.1
126
Normal
0.1
478
Normal
0.1
978
Normal
0.1
518
Normal
0.1
956
Normal
0.1
481
Tumor
0.1
224
Normal
0.1
641
Tumor
0.1
727
Tumor
0.1
755
Tumor
0.1
662
Normal
0.1
696
Normal
0.1
261
Tumor
0.1
666
Normal
0.1
884
Normal
0.1
686
Normal
0.1
918
Normal
0.1
516
Normal
0.1
571
Tumor
0.0
1046
Normal
0.0
218
Normal
0.0
1044
Normal
0.0
954
Normal
0.0
161
Tumor
0.0
413
Tumor
0.0
858
Normal
0.0
926
Normal
0.0
916
Normal
0.0
465
Tumor
-0.1
227
Tumor
-0.1
524
Normal
-0.1
627
Tumor
-0.1
137
Tumor
-0.1
538
Normal
-0.1
1041
Tumor
-0.1
127
Tumor
-0.1
741
Tumor
-0.1
461
Tumor
-0.1
192
Normal
-0.1
363
Tumor
-0.2
1027
Tumor
-0.2
434
Normal
-0.2
873
Tumor
-0.2
195
Tumor
-0.2
695
Tumor
-0.3
391
Tumor
-0.3
141
Tumor
-0.3
921
Tumor
-0.3
145
Tumor
-0.3
615
Tumor
-0.3
217
Tumor
-0.4
713
Tumor
-0.4
515
Tumor
-0.4
867
Tumor
-0.4
341
Tumor
-0.4
185
Tumor
-0.4
563
Tumor
-0.4
357
Tumor
-0.4
536
Normal
-0.5
383
Tumor
-0.5
617
Tumor
-0.5
221
Tumor
-0.5
375
Tumor
-0.5
415
Tumor
-0.5
331
Tumor
-0.5
1015
Tumor
-0.5
395
Tumor
-0.5
191
Tumor
-0.5
857
Tumor
-0.5
951
Tumor
-0.5
721
Tumor
-0.6
925
Tumor
-0.6
313
Tumor
-0.6
477
Tumor
-0.6
883
Tumor
-0.6
393
Tumor
-0.6
387
Tumor
-0.6
367
Tumor
-0.6
297
Tumor
-0.6
943
Tumor
-0.6
877
Tumor
-0.6
533
Tumor
-0.6
881
Tumor
-0.7
421
Tumor
-0.7
447
Tumor
-0.7
975
Tumor
-0.7
213
Tumor
-0.7
411
Tumor
-0.7
113
Tumor
-0.7
491
Tumor
-0.7
647
Tumor
-0.7
353
Tumor
-0.7
814
Normal
-0.7
967
Tumor
-0.7
823
Tumor
-0.7
911
Tumor
-0.8
311
Tumor
-0.8
517
Tumor
-0.8
785
Tumor
-0.8
915
Tumor
-0.8
187
Tumor
-0.8
983
Tumor
-0.8
471
Tumor
-0.9
385
Tumor
-0.9
917
Tumor
-0.9
277
Tumor
-0.9
463
Tumor
-0.9
953
Tumor
-0.9
283
Tumor
-0.9
171
Tumor
-0.9
223
Tumor
-0.9
267
Tumor
-0.9
483
Tumor
-0.9
327
Tumor
-0.9
451
Tumor
-1.0
445
Tumor
-1.0
285
Tumor
-1.0
1043
Tumor
-1.0
125
Tumor
-1.0
343
Tumor
-1.0
977
Tumor
-1.0
455
Tumor
-1.0
553
Tumor
-1.0
433
Tumor
-1.0
573
Tumor
-1.0
473
Tumor
-1.0
715
Tumor
-1.1
663
Tumor
-1.1
1021
Tumor
-1.1
487
Tumor
-1.1
525
Tumor
-1.1
112
Tumor
-1.1
211
Tumor
-1.1
965
Tumor
-1.1
557
Tumor
-1.1
355
Tumor
-1.1
1013
Tumor
-1.1
425
Tumor
-1.1
863
Tumor
-1.1
147
Tumor
-1.1
351
Tumor
-1.2
817
Tumor
-1.2
567
Tumor
-1.2
123
Tumor
-1.2
851
Tumor
-1.2
467
Tumor
-1.2
963
Tumor
-1.2
431
Tumor
-1.3
923
Tumor
-1.3
443
Tumor
-1.3
957
Tumor
-1.3
545
Tumor
-1.3
813
Tumor
-1.3
1031
Tumor
-1.4
493
Tumor
-1.4
257
Tumor
-1.4
685
Tumor
-1.4
913
Tumor
-1.4
497
Tumor
-1.4
724
Normal
-1.4
815
Tumor
-1.4
537
Tumor
-1.4
937
Tumor
-1.4
523
Tumor
-1.4
271
Tumor
-1.4
861
Tumor
-1.5
671
Tumor
-1.5
1025
Tumor
-1.5
231
Tumor
-1.5
527
Tumor
-1.5
737
Tumor
-1.5
745
Tumor
-1.6
665
Tumor
-1.6
865
Tumor
-1.6
777
Tumor
-1.6
427
Tumor
-1.6
661
Tumor
-1.7
635
Tumor
-1.7
535
Tumor
-1.8
697
Tumor
-1.9
131
Tumor
-1.9
135
Tumor
-1.9
743
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
