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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBP7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
99.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
98.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
93.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
90.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
87.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
82.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
77.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
75.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
75.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
74.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
71.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
69.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
68.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
68.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
66.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
66.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
61.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
61.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
61.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
58.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
58.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
55.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
54.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
51.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
51.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
50.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
47.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
44.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
41.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
39.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBP7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
105.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
67.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
67.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
67.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
59.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
2.2
981
Tumor
1.8
517
Tumor
1.7
1027
Tumor
1.7
171
Tumor
1.6
1041
Tumor
1.4
423
Tumor
1.4
363
Tumor
1.4
741
Tumor
1.3
953
Tumor
1.3
353
Tumor
1.3
727
Tumor
1.3
341
Tumor
1.2
695
Tumor
1.1
715
Tumor
1.1
965
Tumor
1.1
911
Tumor
1.1
231
Tumor
1.1
647
Tumor
1.0
433
Tumor
1.0
977
Tumor
0.9
724
Normal
0.9
513
Tumor
0.9
477
Tumor
0.9
923
Tumor
0.9
393
Tumor
0.8
443
Tumor
0.8
367
Tumor
0.8
745
Tumor
0.8
755
Tumor
0.8
913
Tumor
0.8
874
Normal
0.8
957
Tumor
0.8
851
Tumor
0.8
641
Tumor
0.8
635
Tumor
0.7
685
Tumor
0.7
617
Tumor
0.7
223
Tumor
0.7
915
Tumor
0.7
713
Tumor
0.7
261
Tumor
0.7
523
Tumor
0.7
113
Tumor
0.6
553
Tumor
0.6
137
Tumor
0.6
227
Tumor
0.6
1015
Tumor
0.6
221
Tumor
0.6
557
Tumor
0.6
391
Tumor
0.6
665
Tumor
0.6
435
Tumor
0.5
112
Tumor
0.5
327
Tumor
0.5
161
Tumor
0.5
567
Tumor
0.5
471
Tumor
0.5
123
Tumor
0.5
465
Tumor
0.4
967
Tumor
0.4
867
Tumor
0.4
461
Tumor
0.4
445
Tumor
0.3
191
Tumor
0.3
861
Tumor
0.3
873
Tumor
0.3
864
Normal
0.3
1025
Tumor
0.3
777
Tumor
0.3
1021
Tumor
0.3
141
Tumor
0.3
473
Tumor
0.3
537
Tumor
0.2
125
Tumor
0.2
131
Tumor
0.2
185
Tumor
0.2
147
Tumor
0.2
525
Tumor
0.2
1043
Tumor
0.2
571
Tumor
0.2
451
Tumor
0.2
877
Tumor
0.2
124
Normal
0.1
563
Tumor
0.1
823
Tumor
0.1
716
Normal
0.1
852
Normal
0.1
467
Tumor
0.1
883
Tumor
0.1
866
Normal
0.1
738
Normal
0.1
145
Tumor
0.1
618
Normal
0.1
387
Tumor
0.1
722
Normal
0.1
217
Tumor
0.1
1028
Normal
0.1
558
Normal
0.1
395
Tumor
0.0
671
Tumor
0.0
224
Normal
0.0
925
Tumor
0.0
975
Tumor
0.0
568
Normal
0.0
392
Normal
0.0
921
Tumor
0.0
146
Normal
0.0
277
Tumor
0.0
868
Normal
0.0
515
Tumor
0.0
431
Tumor
0.0
284
Normal
0.0
365
Tumor
0.0
111
Normal
0.0
627
Tumor
0.0
785
Tumor
0.0
564
Normal
0.0
572
Normal
-0.1
518
Normal
-0.1
192
Normal
-0.1
1045
Tumor
-0.1
126
Normal
-0.1
195
Tumor
-0.1
956
Normal
-0.1
963
Tumor
-0.1
574
Normal
-0.1
615
Tumor
-0.1
425
Tumor
-0.1
815
Tumor
-0.1
424
Normal
-0.1
355
Tumor
-0.1
863
Tumor
-0.1
1031
Tumor
-0.2
187
Tumor
-0.2
412
Normal
-0.2
816
Normal
-0.2
533
Tumor
-0.2
742
Normal
-0.2
128
Normal
-0.2
257
Tumor
-0.2
286
Normal
-0.2
696
Normal
-0.2
364
Normal
-0.2
952
Normal
-0.2
422
Normal
-0.2
535
Tumor
-0.2
918
Normal
-0.2
983
Tumor
-0.2
813
Tumor
-0.2
127
Tumor
-0.3
114
Normal
-0.3
672
Normal
-0.3
984
Normal
-0.3
737
Tumor
-0.3
686
Normal
-0.3
721
Tumor
-0.3
817
Tumor
-0.3
421
Tumor
-0.3
728
Normal
-0.3
343
Tumor
-0.3
1013
Tumor
-0.3
1032
Normal
-0.3
434
Normal
-0.3
218
Normal
-0.3
481
Tumor
-0.3
463
Tumor
-0.3
232
Normal
-0.3
212
Normal
-0.3
444
Normal
-0.3
196
Normal
-0.3
958
Normal
-0.3
328
Normal
-0.3
743
Tumor
-0.3
524
Normal
-0.3
361
Tumor
-0.3
714
Normal
-0.3
1042
Normal
-0.4
966
Normal
-0.4
478
Normal
-0.4
388
Normal
-0.4
545
Tumor
-0.4
968
Normal
-0.4
356
Normal
-0.4
662
Normal
-0.4
954
Normal
-0.4
964
Normal
-0.4
746
Normal
-0.4
228
Normal
-0.4
744
Normal
-0.4
865
Tumor
-0.4
466
Normal
-0.4
924
Normal
-0.4
636
Normal
-0.4
514
Normal
-0.4
528
Normal
-0.4
213
Tumor
-0.4
268
Normal
-0.4
136
Normal
-0.4
536
Normal
-0.4
723
Tumor
-0.4
214
Normal
-0.4
951
Tumor
-0.4
138
Normal
-0.4
884
Normal
-0.5
132
Normal
-0.5
262
Normal
-0.5
573
Tumor
-0.5
462
Normal
-0.5
938
Normal
-0.5
982
Normal
-0.5
386
Normal
-0.5
978
Normal
-0.5
824
Normal
-0.5
142
Normal
-0.5
1026
Normal
-0.5
1046
Normal
-0.5
474
Normal
-0.5
312
Normal
-0.5
1014
Normal
-0.5
384
Normal
-0.5
396
Normal
-0.5
267
Tumor
-0.5
311
Tumor
-0.5
818
Normal
-0.5
976
Normal
-0.5
278
Normal
-0.5
258
Normal
-0.5
666
Normal
-0.5
937
Tumor
-0.5
414
Normal
-0.5
527
Tumor
-0.5
526
Normal
-0.6
538
Normal
-0.6
472
Normal
-0.6
756
Normal
-0.6
186
Normal
-0.6
1022
Normal
-0.6
955
Tumor
-0.6
376
Normal
-0.6
862
Normal
-0.6
857
Tumor
-0.6
446
Normal
-0.6
283
Tumor
-0.6
516
Normal
-0.6
616
Normal
-0.6
882
Normal
-0.6
814
Normal
-0.6
352
Normal
-0.6
162
Normal
-0.6
366
Normal
-0.6
148
Normal
-0.6
698
Normal
-0.6
368
Normal
-0.6
778
Normal
-0.6
428
Normal
-0.6
912
Normal
-0.6
546
Normal
-0.6
628
Normal
-0.6
271
Tumor
-0.7
786
Normal
-0.7
1044
Normal
-0.7
362
Normal
-0.7
416
Normal
-0.7
482
Normal
-0.7
394
Normal
-0.7
447
Tumor
-0.7
642
Normal
-0.7
188
Normal
-0.7
468
Normal
-0.7
297
Tumor
-0.7
172
Normal
-0.7
916
Normal
-0.7
272
Normal
-0.7
534
Normal
-0.7
1016
Normal
-0.8
436
Normal
-0.8
917
Tumor
-0.8
858
Normal
-0.8
222
Normal
-0.8
455
Tumor
-0.8
487
Tumor
-0.8
452
Normal
-0.8
344
Normal
-0.8
554
Normal
-0.8
358
Normal
-0.8
332
Normal
-0.8
464
Normal
-0.8
484
Normal
-0.8
314
Normal
-0.9
432
Normal
-0.9
298
Normal
-0.9
413
Tumor
-0.9
488
Normal
-0.9
914
Normal
-0.9
135
Tumor
-0.9
426
Normal
-0.9
922
Normal
-0.9
926
Normal
-0.9
354
Normal
-0.9
383
Tumor
-1.0
664
Normal
-1.0
448
Normal
-1.0
456
Normal
-1.0
697
Tumor
-1.0
881
Tumor
-1.0
427
Tumor
-1.0
663
Tumor
-1.0
415
Tumor
-1.0
313
Tumor
-1.0
211
Tumor
-1.0
351
Tumor
-1.0
878
Normal
-1.1
385
Tumor
-1.1
494
Normal
-1.1
944
Normal
-1.1
491
Tumor
-1.2
331
Tumor
-1.2
342
Normal
-1.3
648
Normal
-1.3
375
Tumor
-1.4
285
Tumor
-1.4
357
Tumor
-1.4
498
Normal
-1.5
492
Normal
-1.6
493
Tumor
-1.7
661
Tumor
-1.7
483
Tumor
-1.8
943
Tumor
-1.9
497
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
