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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JAK1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
135.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
126.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
118.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
106.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
98.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
94.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
80.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
75.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
73.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
72.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
69.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
68.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
64.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
64.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
63.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
63.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
60.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
59.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
59.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
59.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
58.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
57.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
55.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
55.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
55.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
52.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
49.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
43.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
43.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
42.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
42.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
41.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
34.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
32.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JAK1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.7
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
87.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
81.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
75.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
69.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
69.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
67.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
67.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
60.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
58.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
56.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
52.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
51.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
51.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
50.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
48.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
45.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
41.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
40.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
36.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.1
421
Tumor
0.8
573
Tumor
0.6
187
Tumor
0.5
533
Tumor
0.5
493
Tumor
0.5
1041
Tumor
0.5
721
Tumor
0.4
192
Normal
0.4
498
Normal
0.4
545
Tumor
0.4
142
Normal
0.4
538
Normal
0.4
744
Normal
0.4
451
Tumor
0.4
478
Normal
0.3
878
Normal
0.3
376
Normal
0.3
1028
Normal
0.3
415
Tumor
0.3
483
Tumor
0.3
477
Tumor
0.3
1014
Normal
0.3
696
Normal
0.3
492
Normal
0.3
742
Normal
0.3
778
Normal
0.3
686
Normal
0.3
786
Normal
0.3
343
Tumor
0.3
524
Normal
0.3
352
Normal
0.3
494
Normal
0.3
124
Normal
0.3
1032
Normal
0.3
954
Normal
0.3
223
Tumor
0.3
396
Normal
0.3
1022
Normal
0.3
984
Normal
0.3
231
Tumor
0.3
536
Normal
0.3
191
Tumor
0.3
884
Normal
0.3
526
Normal
0.3
468
Normal
0.3
818
Normal
0.3
978
Normal
0.3
484
Normal
0.3
563
Tumor
0.3
672
Normal
0.3
392
Normal
0.3
628
Normal
0.3
474
Normal
0.3
1016
Normal
0.3
964
Normal
0.3
952
Normal
0.2
224
Normal
0.2
456
Normal
0.2
413
Tumor
0.2
685
Tumor
0.2
574
Normal
0.2
882
Normal
0.2
1026
Normal
0.2
554
Normal
0.2
268
Normal
0.2
728
Normal
0.2
272
Normal
0.2
1025
Tumor
0.2
146
Normal
0.2
434
Normal
0.2
572
Normal
0.2
472
Normal
0.2
716
Normal
0.2
883
Tumor
0.2
958
Normal
0.2
218
Normal
0.2
344
Normal
0.2
196
Normal
0.2
546
Normal
0.2
467
Tumor
0.2
966
Normal
0.2
298
Normal
0.2
912
Normal
0.2
314
Normal
0.2
111
Normal
0.2
332
Normal
0.2
918
Normal
0.2
616
Normal
0.2
814
Normal
0.2
662
Normal
0.2
213
Tumor
0.2
976
Normal
0.2
262
Normal
0.2
746
Normal
0.2
384
Normal
0.2
488
Normal
0.2
955
Tumor
0.2
356
Normal
0.2
278
Normal
0.2
714
Normal
0.2
212
Normal
0.2
922
Normal
0.2
466
Normal
0.2
852
Normal
0.2
1042
Normal
0.2
558
Normal
0.2
312
Normal
0.2
636
Normal
0.2
915
Tumor
0.2
862
Normal
0.2
824
Normal
0.2
132
Normal
0.2
1044
Normal
0.2
362
Normal
0.2
482
Normal
0.2
516
Normal
0.2
364
Normal
0.2
664
Normal
0.2
446
Normal
0.2
916
Normal
0.2
926
Normal
0.2
861
Tumor
0.2
528
Normal
0.2
514
Normal
0.2
358
Normal
0.2
126
Normal
0.2
938
Normal
0.2
568
Normal
0.2
471
Tumor
0.2
284
Normal
0.2
618
Normal
0.2
564
Normal
0.2
557
Tumor
0.2
944
Normal
0.1
864
Normal
0.1
642
Normal
0.1
354
Normal
0.1
738
Normal
0.1
722
Normal
0.1
462
Normal
0.1
518
Normal
0.1
286
Normal
0.1
914
Normal
0.1
368
Normal
0.1
816
Normal
0.1
217
Tumor
0.1
737
Tumor
0.1
452
Normal
0.1
195
Tumor
0.1
148
Normal
0.1
866
Normal
0.1
416
Normal
0.1
391
Tumor
0.1
136
Normal
0.1
515
Tumor
0.1
222
Normal
0.1
464
Normal
0.1
444
Normal
0.1
412
Normal
0.1
424
Normal
0.1
432
Normal
0.1
388
Normal
0.1
414
Normal
0.1
214
Normal
0.1
873
Tumor
0.1
188
Normal
0.1
874
Normal
0.1
975
Tumor
0.1
211
Tumor
0.1
756
Normal
0.1
666
Normal
0.1
145
Tumor
0.1
968
Normal
0.1
138
Normal
0.1
394
Normal
0.1
982
Normal
0.1
943
Tumor
0.1
436
Normal
0.1
723
Tumor
0.1
128
Normal
0.1
858
Normal
0.1
956
Normal
0.1
617
Tumor
0.1
448
Normal
0.1
857
Tumor
0.1
924
Normal
0.1
426
Normal
0.1
957
Tumor
0.1
741
Tumor
0.1
162
Normal
0.1
1046
Normal
0.1
114
Normal
0.1
534
Normal
0.1
342
Normal
0.1
232
Normal
0.1
648
Normal
0.1
393
Tumor
0.1
455
Tumor
0.1
258
Normal
0.1
481
Tumor
0.0
715
Tumor
0.0
868
Normal
0.0
366
Normal
0.0
661
Tumor
0.0
112
Tumor
0.0
1021
Tumor
0.0
867
Tumor
0.0
395
Tumor
0.0
527
Tumor
0.0
428
Normal
0.0
261
Tumor
0.0
863
Tumor
0.0
823
Tumor
0.0
525
Tumor
0.0
172
Normal
0.0
713
Tumor
0.0
228
Normal
0.0
665
Tumor
0.0
386
Normal
0.0
698
Normal
0.0
963
Tumor
0.0
977
Tumor
0.0
951
Tumor
0.0
461
Tumor
0.0
785
Tumor
0.0
911
Tumor
0.0
422
Normal
0.0
1015
Tumor
0.0
185
Tumor
0.0
917
Tumor
0.0
171
Tumor
0.0
497
Tumor
0.0
186
Normal
0.0
328
Normal
0.0
881
Tumor
0.0
1045
Tumor
0.0
615
Tumor
0.0
1031
Tumor
0.0
137
Tumor
0.0
537
Tumor
0.0
447
Tumor
0.0
491
Tumor
0.0
431
Tumor
-0.1
465
Tumor
-0.1
463
Tumor
-0.1
755
Tumor
-0.1
271
Tumor
-0.1
433
Tumor
-0.1
131
Tumor
-0.1
365
Tumor
-0.1
535
Tumor
-0.1
817
Tumor
-0.1
443
Tumor
-0.1
913
Tumor
-0.1
385
Tumor
-0.1
647
Tumor
-0.1
355
Tumor
-0.1
113
Tumor
-0.1
724
Normal
-0.1
523
Tumor
-0.1
937
Tumor
-0.1
965
Tumor
-0.1
813
Tumor
-0.2
141
Tumor
-0.2
851
Tumor
-0.2
311
Tumor
-0.2
445
Tumor
-0.2
553
Tumor
-0.2
277
Tumor
-0.2
473
Tumor
-0.2
327
Tumor
-0.2
695
Tumor
-0.2
423
Tumor
-0.2
513
Tumor
-0.2
353
Tumor
-0.2
981
Tumor
-0.2
135
Tumor
-0.2
925
Tumor
-0.2
221
Tumor
-0.2
147
Tumor
-0.3
427
Tumor
-0.3
1043
Tumor
-0.3
375
Tumor
-0.3
697
Tumor
-0.3
923
Tumor
-0.3
383
Tumor
-0.3
127
Tumor
-0.3
1013
Tumor
-0.3
727
Tumor
-0.3
341
Tumor
-0.3
635
Tumor
-0.3
297
Tumor
-0.3
777
Tumor
-0.3
627
Tumor
-0.3
921
Tumor
-0.3
387
Tumor
-0.3
641
Tumor
-0.3
161
Tumor
-0.3
745
Tumor
-0.3
571
Tumor
-0.3
125
Tumor
-0.3
267
Tumor
-0.4
361
Tumor
-0.4
567
Tumor
-0.4
865
Tumor
-0.4
815
Tumor
-0.4
283
Tumor
-0.4
663
Tumor
-0.4
487
Tumor
-0.4
435
Tumor
-0.4
331
Tumor
-0.4
517
Tumor
-0.4
411
Tumor
-0.4
671
Tumor
-0.5
357
Tumor
-0.5
257
Tumor
-0.5
367
Tumor
-0.5
983
Tumor
-0.5
363
Tumor
-0.5
967
Tumor
-0.5
227
Tumor
-0.6
953
Tumor
-0.7
123
Tumor
-0.7
285
Tumor
-0.7
1027
Tumor
-0.7
313
Tumor
-0.7
877
Tumor
-0.8
351
Tumor
-0.9
743
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.