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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AK4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
162.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
117.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
113.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
107.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
106.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
96.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
89.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
86.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
82.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
78.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
74.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
69.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
58.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
57.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
56.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
53.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
52.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
52.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
51.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
47.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
42.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
41.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
40.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
34.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AK4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
231
Samples
Sample
Description
TPM
DO45219
0 years, male, NA, stage:2, alive, 1080 days
96.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
88.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
87.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
83.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
57.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
51.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
51.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
47.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
45.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
40.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
1.3
145
Tumor
1.2
627
Tumor
1.2
112
Tumor
1.0
537
Tumor
1.0
636
Normal
0.9
648
Normal
0.9
925
Tumor
0.8
615
Tumor
0.8
267
Tumor
0.7
912
Normal
0.7
452
Normal
0.7
466
Normal
0.7
746
Normal
0.7
414
Normal
0.7
786
Normal
0.7
883
Tumor
0.7
756
Normal
0.7
513
Tumor
0.7
342
Normal
0.7
664
Normal
0.6
222
Normal
0.6
483
Tumor
0.6
567
Tumor
0.6
462
Normal
0.6
616
Normal
0.6
376
Normal
0.6
358
Normal
0.6
564
Normal
0.6
618
Normal
0.6
723
Tumor
0.6
824
Normal
0.6
186
Normal
0.6
862
Normal
0.6
1032
Normal
0.6
742
Normal
0.6
298
Normal
0.6
864
Normal
0.6
394
Normal
0.6
435
Tumor
0.6
162
Normal
0.5
858
Normal
0.5
882
Normal
0.5
388
Normal
0.5
132
Normal
0.5
436
Normal
0.5
868
Normal
0.5
477
Tumor
0.5
662
Normal
0.5
172
Normal
0.5
563
Tumor
0.5
666
Normal
0.5
628
Normal
0.5
448
Normal
0.5
196
Normal
0.5
392
Normal
0.5
922
Normal
0.5
714
Normal
0.5
424
Normal
0.5
314
Normal
0.5
148
Normal
0.5
884
Normal
0.5
738
Normal
0.5
744
Normal
0.5
568
Normal
0.5
354
Normal
0.5
484
Normal
0.5
278
Normal
0.4
944
Normal
0.4
866
Normal
0.4
258
Normal
0.4
136
Normal
0.4
232
Normal
0.4
464
Normal
0.4
558
Normal
0.4
422
Normal
0.4
1041
Tumor
0.4
1046
Normal
0.4
571
Tumor
0.4
818
Normal
0.4
214
Normal
0.4
488
Normal
0.4
142
Normal
0.4
938
Normal
0.4
356
Normal
0.4
426
Normal
0.4
1026
Normal
0.4
365
Tumor
0.4
572
Normal
0.4
366
Normal
0.4
741
Tumor
0.4
698
Normal
0.4
428
Normal
0.4
432
Normal
0.4
352
Normal
0.4
642
Normal
0.4
873
Tumor
0.4
332
Normal
0.4
1027
Tumor
0.4
262
Normal
0.4
328
Normal
0.4
911
Tumor
0.3
867
Tumor
0.3
218
Normal
0.3
722
Normal
0.3
976
Normal
0.3
1022
Normal
0.3
396
Normal
0.3
874
Normal
0.3
111
Normal
0.3
138
Normal
0.3
816
Normal
0.3
914
Normal
0.3
926
Normal
0.3
341
Tumor
0.3
525
Tumor
0.3
228
Normal
0.3
312
Normal
0.3
362
Normal
0.3
361
Tumor
0.3
672
Normal
0.3
468
Normal
0.3
924
Normal
0.3
128
Normal
0.3
574
Normal
0.3
716
Normal
0.3
446
Normal
0.3
391
Tumor
0.3
534
Normal
0.3
472
Normal
0.3
416
Normal
0.3
728
Normal
0.3
387
Tumor
0.3
114
Normal
0.3
421
Tumor
0.3
953
Tumor
0.3
146
Normal
0.3
272
Normal
0.3
482
Normal
0.3
528
Normal
0.3
696
Normal
0.2
286
Normal
0.2
1045
Tumor
0.2
412
Normal
0.2
515
Tumor
0.2
617
Tumor
0.2
514
Normal
0.2
344
Normal
0.2
1025
Tumor
0.2
284
Normal
0.2
1044
Normal
0.2
367
Tumor
0.2
918
Normal
0.2
494
Normal
0.2
526
Normal
0.2
456
Normal
0.2
878
Normal
0.2
686
Normal
0.2
384
Normal
0.2
1016
Normal
0.2
518
Normal
0.2
964
Normal
0.2
212
Normal
0.2
778
Normal
0.2
113
Tumor
0.2
474
Normal
0.2
191
Tumor
0.2
954
Normal
0.2
443
Tumor
0.2
124
Normal
0.2
364
Normal
0.2
127
Tumor
0.1
1014
Normal
0.1
982
Normal
0.1
852
Normal
0.1
161
Tumor
0.1
952
Normal
0.1
126
Normal
0.1
546
Normal
0.1
137
Tumor
0.1
386
Normal
0.1
978
Normal
0.1
968
Normal
0.1
857
Tumor
0.1
217
Tumor
0.1
368
Normal
0.1
185
Tumor
0.1
427
Tumor
0.0
224
Normal
0.0
745
Tumor
0.0
956
Normal
0.0
958
Normal
0.0
413
Tumor
0.0
1042
Normal
0.0
984
Normal
0.0
695
Tumor
0.0
516
Normal
0.0
557
Tumor
0.0
463
Tumor
0.0
461
Tumor
0.0
188
Normal
-0.1
951
Tumor
-0.1
423
Tumor
-0.1
257
Tumor
-0.1
487
Tumor
-0.1
851
Tumor
-0.1
393
Tumor
-0.1
573
Tumor
-0.1
685
Tumor
-0.1
665
Tumor
-0.1
955
Tumor
-0.1
916
Normal
-0.1
227
Tumor
-0.1
554
Normal
-0.1
815
Tumor
-0.1
966
Normal
-0.1
1028
Normal
-0.1
434
Normal
-0.1
357
Tumor
-0.1
981
Tumor
-0.1
517
Tumor
-0.2
785
Tumor
-0.2
481
Tumor
-0.2
444
Normal
-0.2
663
Tumor
-0.2
478
Normal
-0.2
431
Tumor
-0.2
223
Tumor
-0.2
524
Normal
-0.2
363
Tumor
-0.2
261
Tumor
-0.2
415
Tumor
-0.2
268
Normal
-0.2
865
Tumor
-0.2
967
Tumor
-0.3
647
Tumor
-0.3
125
Tumor
-0.3
192
Normal
-0.3
425
Tumor
-0.3
721
Tumor
-0.3
965
Tumor
-0.3
135
Tumor
-0.3
395
Tumor
-0.3
433
Tumor
-0.3
1013
Tumor
-0.3
1021
Tumor
-0.3
538
Normal
-0.3
141
Tumor
-0.3
353
Tumor
-0.3
641
Tumor
-0.3
913
Tumor
-0.3
498
Normal
-0.3
492
Normal
-0.4
147
Tumor
-0.4
713
Tumor
-0.4
451
Tumor
-0.4
327
Tumor
-0.4
221
Tumor
-0.4
661
Tumor
-0.5
533
Tumor
-0.5
957
Tumor
-0.5
535
Tumor
-0.5
755
Tumor
-0.5
123
Tumor
-0.5
1043
Tumor
-0.5
195
Tumor
-0.5
313
Tumor
-0.5
1015
Tumor
-0.5
737
Tumor
-0.6
915
Tumor
-0.6
231
Tumor
-0.6
271
Tumor
-0.6
777
Tumor
-0.6
213
Tumor
-0.6
527
Tumor
-0.6
536
Normal
-0.6
863
Tumor
-0.6
473
Tumor
-0.7
285
Tumor
-0.7
921
Tumor
-0.7
497
Tumor
-0.7
187
Tumor
-0.7
297
Tumor
-0.7
975
Tumor
-0.7
411
Tumor
-0.7
1031
Tumor
-0.7
375
Tumor
-0.8
817
Tumor
-0.8
823
Tumor
-0.8
963
Tumor
-0.8
671
Tumor
-0.8
491
Tumor
-0.8
383
Tumor
-0.8
455
Tumor
-0.8
493
Tumor
-0.8
861
Tumor
-0.8
727
Tumor
-0.8
171
Tumor
-0.8
445
Tumor
-0.8
355
Tumor
-0.9
877
Tumor
-0.9
937
Tumor
-0.9
724
Normal
-0.9
881
Tumor
-0.9
471
Tumor
-0.9
635
Tumor
-1.0
331
Tumor
-1.0
923
Tumor
-1.0
523
Tumor
-1.0
943
Tumor
-1.0
983
Tumor
-1.0
715
Tumor
-1.0
977
Tumor
-1.1
814
Normal
-1.1
351
Tumor
-1.1
385
Tumor
-1.1
447
Tumor
-1.1
131
Tumor
-1.2
283
Tumor
-1.2
277
Tumor
-1.2
343
Tumor
-1.3
311
Tumor
-1.3
813
Tumor
-1.4
917
Tumor
-1.4
553
Tumor
-1.5
545
Tumor
-1.5
467
Tumor
-1.6
697
Tumor
-1.8
211
Tumor
-2.3
743
Tumor
-2.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
