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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAGOH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
185.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
182.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
156.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
119.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
116.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
113.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
111.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
110.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
109.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
108.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
107.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
106.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
106.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
103.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
103.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
103.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
103.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
102.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
101.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
100.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
96.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
94.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
94.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
91.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
91.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
90.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
90.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
90.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
89.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
88.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
87.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
83.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
83.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
82.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
80.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
80.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
79.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
78.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
76.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
76.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
76.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
75.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
75.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
75.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
75.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
74.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
73.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
72.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
72.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
72.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
71.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
71.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
70.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
70.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
70.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
70.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
70.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
69.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
68.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
68.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
66.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
66.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
65.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
65.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
64.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
63.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
63.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
62.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
62.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
62.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
61.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
61.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
60.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
60.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
60.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
59.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
59.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
59.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
59.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
59.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
58.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
58.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
57.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
57.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
56.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
56.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
55.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
54.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
54.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
53.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
53.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
53.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
53.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
53.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
52.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
52.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
52.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
51.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
51.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
50.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
50.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
49.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
49.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
49.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
49.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
48.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
47.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
46.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
46.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
46.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
45.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
45.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
45.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
44.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
43.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
43.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
42.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
42.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
40.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
39.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
36.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
36.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
35.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
34.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
30.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAGOH is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.3
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
106.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
99.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
66.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
65.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
62.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
61.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
59.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
49.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
46.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
43.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
38.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.3
411
Tumor
1.2
951
Tumor
1.2
647
Tumor
1.2
497
Tumor
1.1
965
Tumor
1.0
545
Tumor
1.0
865
Tumor
1.0
977
Tumor
0.9
425
Tumor
0.9
355
Tumor
0.9
943
Tumor
0.9
523
Tumor
0.9
1013
Tumor
0.9
1021
Tumor
0.8
131
Tumor
0.8
533
Tumor
0.8
777
Tumor
0.8
743
Tumor
0.8
527
Tumor
0.8
487
Tumor
0.8
211
Tumor
0.7
277
Tumor
0.7
953
Tumor
0.7
661
Tumor
0.7
975
Tumor
0.6
413
Tumor
0.6
967
Tumor
0.6
727
Tumor
0.6
1031
Tumor
0.6
877
Tumor
0.6
923
Tumor
0.6
537
Tumor
0.6
663
Tumor
0.6
921
Tumor
0.6
473
Tumor
0.6
937
Tumor
0.6
553
Tumor
0.6
483
Tumor
0.5
724
Normal
0.5
491
Tumor
0.5
493
Tumor
0.5
477
Tumor
0.5
813
Tumor
0.5
283
Tumor
0.5
331
Tumor
0.5
161
Tumor
0.5
573
Tumor
0.5
983
Tumor
0.5
881
Tumor
0.5
213
Tumor
0.4
535
Tumor
0.4
112
Tumor
0.4
351
Tumor
0.4
695
Tumor
0.4
515
Tumor
0.4
1025
Tumor
0.4
883
Tumor
0.4
357
Tumor
0.4
313
Tumor
0.4
737
Tumor
0.4
814
Normal
0.4
525
Tumor
0.4
917
Tumor
0.4
463
Tumor
0.4
415
Tumor
0.3
285
Tumor
0.3
471
Tumor
0.3
524
Normal
0.3
817
Tumor
0.3
443
Tumor
0.3
571
Tumor
0.3
785
Tumor
0.3
697
Tumor
0.3
815
Tumor
0.3
963
Tumor
0.3
447
Tumor
0.3
713
Tumor
0.3
513
Tumor
0.3
431
Tumor
0.3
271
Tumor
0.3
671
Tumor
0.2
873
Tumor
0.2
433
Tumor
0.2
867
Tumor
0.2
741
Tumor
0.2
517
Tumor
0.2
536
Normal
0.2
385
Tumor
0.2
665
Tumor
0.2
863
Tumor
0.2
481
Tumor
0.2
383
Tumor
0.2
755
Tumor
0.2
1027
Tumor
0.2
217
Tumor
0.2
427
Tumor
0.2
123
Tumor
0.2
492
Normal
0.2
478
Normal
0.2
915
Tumor
0.2
1045
Tumor
0.2
538
Normal
0.1
461
Tumor
0.1
387
Tumor
0.1
861
Tumor
0.1
966
Normal
0.1
1043
Tumor
0.1
913
Tumor
0.1
393
Tumor
0.1
467
Tumor
0.1
823
Tumor
0.1
911
Tumor
0.1
925
Tumor
0.1
375
Tumor
0.1
916
Normal
0.1
1015
Tumor
0.1
685
Tumor
0.1
1041
Tumor
0.1
327
Tumor
0.1
954
Normal
0.1
435
Tumor
0.1
341
Tumor
0.0
297
Tumor
0.0
227
Tumor
0.0
635
Tumor
0.0
343
Tumor
0.0
221
Tumor
0.0
113
Tumor
0.0
554
Normal
0.0
715
Tumor
0.0
857
Tumor
0.0
567
Tumor
0.0
955
Tumor
0.0
141
Tumor
0.0
938
Normal
0.0
367
Tumor
0.0
231
Tumor
0.0
1032
Normal
0.0
488
Normal
0.0
395
Tumor
0.0
924
Normal
0.0
498
Normal
0.0
922
Normal
0.0
484
Normal
0.0
721
Tumor
0.0
465
Tumor
0.0
423
Tumor
0.0
267
Tumor
0.0
641
Tumor
-0.1
534
Normal
-0.1
958
Normal
-0.1
563
Tumor
-0.1
448
Normal
-0.1
363
Tumor
-0.1
125
Tumor
-0.1
223
Tumor
-0.1
944
Normal
-0.1
311
Tumor
-0.1
824
Normal
-0.1
185
Tumor
-0.1
171
Tumor
-0.1
964
Normal
-0.1
472
Normal
-0.1
557
Tumor
-0.1
191
Tumor
-0.1
455
Tumor
-0.1
1028
Normal
-0.1
516
Normal
-0.1
926
Normal
-0.1
445
Tumor
-0.1
851
Tumor
-0.1
412
Normal
-0.1
135
Tumor
-0.1
778
Normal
-0.1
494
Normal
-0.1
391
Tumor
-0.1
1026
Normal
-0.1
952
Normal
-0.1
328
Normal
-0.1
1044
Normal
-0.1
984
Normal
-0.1
1046
Normal
-0.1
627
Tumor
-0.1
878
Normal
-0.1
1042
Normal
-0.1
546
Normal
-0.1
142
Normal
-0.1
434
Normal
-0.2
514
Normal
-0.2
364
Normal
-0.2
745
Tumor
-0.2
912
Normal
-0.2
968
Normal
-0.2
187
Tumor
-0.2
212
Normal
-0.2
526
Normal
-0.2
451
Tumor
-0.2
482
Normal
-0.2
474
Normal
-0.2
756
Normal
-0.2
981
Tumor
-0.2
518
Normal
-0.2
976
Normal
-0.2
786
Normal
-0.2
884
Normal
-0.2
284
Normal
-0.2
192
Normal
-0.2
224
Normal
-0.2
882
Normal
-0.2
864
Normal
-0.2
1014
Normal
-0.2
462
Normal
-0.2
261
Tumor
-0.2
344
Normal
-0.2
615
Tumor
-0.2
147
Tumor
-0.2
918
Normal
-0.2
818
Normal
-0.2
858
Normal
-0.2
852
Normal
-0.2
746
Normal
-0.2
956
Normal
-0.2
978
Normal
-0.2
416
Normal
-0.2
365
Tumor
-0.3
356
Normal
-0.3
698
Normal
-0.3
558
Normal
-0.3
528
Normal
-0.3
744
Normal
-0.3
816
Normal
-0.3
868
Normal
-0.3
124
Normal
-0.3
126
Normal
-0.3
228
Normal
-0.3
866
Normal
-0.3
257
Tumor
-0.3
386
Normal
-0.3
1022
Normal
-0.3
361
Tumor
-0.3
114
Normal
-0.3
218
Normal
-0.3
145
Tumor
-0.3
686
Normal
-0.3
444
Normal
-0.3
862
Normal
-0.3
195
Tumor
-0.3
628
Normal
-0.3
421
Tumor
-0.3
146
Normal
-0.3
617
Tumor
-0.4
127
Tumor
-0.4
436
Normal
-0.4
874
Normal
-0.4
742
Normal
-0.4
314
Normal
-0.4
384
Normal
-0.4
432
Normal
-0.4
332
Normal
-0.4
352
Normal
-0.4
268
Normal
-0.4
636
Normal
-0.4
111
Normal
-0.4
642
Normal
-0.4
188
Normal
-0.4
728
Normal
-0.4
572
Normal
-0.4
376
Normal
-0.4
1016
Normal
-0.4
214
Normal
-0.4
298
Normal
-0.4
392
Normal
-0.4
362
Normal
-0.4
738
Normal
-0.4
696
Normal
-0.4
428
Normal
-0.4
162
Normal
-0.4
137
Tumor
-0.4
286
Normal
-0.4
353
Tumor
-0.4
714
Normal
-0.4
982
Normal
-0.4
186
Normal
-0.4
366
Normal
-0.4
616
Normal
-0.4
723
Tumor
-0.4
132
Normal
-0.4
172
Normal
-0.5
662
Normal
-0.5
148
Normal
-0.5
618
Normal
-0.5
396
Normal
-0.5
422
Normal
-0.5
666
Normal
-0.5
138
Normal
-0.5
424
Normal
-0.5
574
Normal
-0.5
388
Normal
-0.5
342
Normal
-0.5
136
Normal
-0.5
466
Normal
-0.5
716
Normal
-0.5
914
Normal
-0.5
278
Normal
-0.5
426
Normal
-0.5
312
Normal
-0.5
394
Normal
-0.5
722
Normal
-0.5
368
Normal
-0.5
272
Normal
-0.5
196
Normal
-0.5
664
Normal
-0.5
128
Normal
-0.5
358
Normal
-0.6
468
Normal
-0.6
446
Normal
-0.6
414
Normal
-0.6
452
Normal
-0.6
262
Normal
-0.6
456
Normal
-0.6
222
Normal
-0.6
354
Normal
-0.6
564
Normal
-0.6
648
Normal
-0.6
672
Normal
-0.6
568
Normal
-0.7
464
Normal
-0.7
258
Normal
-0.7
232
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
