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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS6KA4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS6KA4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.9
865
Tumor
0.7
814
Normal
0.7
311
Tumor
0.7
491
Tumor
0.6
917
Tumor
0.6
737
Tumor
0.6
881
Tumor
0.5
463
Tumor
0.5
951
Tumor
0.5
817
Tumor
0.5
478
Normal
0.5
271
Tumor
0.5
943
Tumor
0.5
963
Tumor
0.5
527
Tumor
0.5
455
Tumor
0.5
967
Tumor
0.5
471
Tumor
0.5
192
Normal
0.5
661
Tumor
0.5
425
Tumor
0.5
213
Tumor
0.4
863
Tumor
0.4
975
Tumor
0.4
283
Tumor
0.4
497
Tumor
0.4
461
Tumor
0.4
492
Normal
0.4
131
Tumor
0.4
363
Tumor
0.4
573
Tumor
0.4
823
Tumor
0.4
483
Tumor
0.4
498
Normal
0.4
857
Tumor
0.4
913
Tumor
0.3
641
Tumor
0.3
125
Tumor
0.3
444
Normal
0.3
467
Tumor
0.3
523
Tumor
0.3
195
Tumor
0.3
141
Tumor
0.3
617
Tumor
0.3
1021
Tumor
0.3
277
Tumor
0.3
224
Normal
0.3
536
Normal
0.3
493
Tumor
0.3
421
Tumor
0.3
916
Normal
0.3
524
Normal
0.3
978
Normal
0.3
434
Normal
0.2
343
Tumor
0.2
487
Tumor
0.2
983
Tumor
0.2
925
Tumor
0.2
447
Tumor
0.2
312
Normal
0.2
212
Normal
0.2
958
Normal
0.2
685
Tumor
0.2
525
Tumor
0.2
545
Tumor
0.2
867
Tumor
0.2
355
Tumor
0.2
297
Tumor
0.2
618
Normal
0.2
852
Normal
0.2
124
Normal
0.2
513
Tumor
0.2
473
Tumor
0.2
185
Tumor
0.2
615
Tumor
0.2
427
Tumor
0.2
755
Tumor
0.2
628
Normal
0.2
217
Tumor
0.2
813
Tumor
0.2
191
Tumor
0.2
647
Tumor
0.2
535
Tumor
0.2
415
Tumor
0.2
533
Tumor
0.2
873
Tumor
0.2
126
Normal
0.2
284
Normal
0.2
147
Tumor
0.2
815
Tumor
0.2
538
Normal
0.2
777
Tumor
0.2
445
Tumor
0.2
383
Tumor
0.2
743
Tumor
0.2
851
Tumor
0.2
516
Normal
0.2
713
Tumor
0.2
395
Tumor
0.1
636
Normal
0.1
135
Tumor
0.1
966
Normal
0.1
785
Tumor
0.1
557
Tumor
0.1
161
Tumor
0.1
563
Tumor
0.1
744
Normal
0.1
721
Tumor
0.1
537
Tumor
0.1
127
Tumor
0.1
1042
Normal
0.1
268
Normal
0.1
387
Tumor
0.1
816
Normal
0.1
221
Tumor
0.1
384
Normal
0.1
514
Normal
0.1
142
Normal
0.1
976
Normal
0.1
957
Tumor
0.1
365
Tumor
0.1
528
Normal
0.1
396
Normal
0.1
954
Normal
0.1
364
Normal
0.1
416
Normal
0.1
866
Normal
0.1
635
Tumor
0.1
874
Normal
0.1
413
Tumor
0.1
738
Normal
0.1
778
Normal
0.1
481
Tumor
0.1
861
Tumor
0.1
968
Normal
0.1
627
Tumor
0.1
884
Normal
0.1
146
Normal
0.1
864
Normal
0.1
858
Normal
0.1
977
Tumor
0.1
327
Tumor
0.1
956
Normal
0.1
724
Normal
0.1
1015
Tumor
0.1
515
Tumor
0.1
446
Normal
0.1
375
Tumor
0.1
114
Normal
0.1
868
Normal
0.1
1031
Tumor
0.1
952
Normal
0.1
431
Tumor
0.0
188
Normal
0.0
386
Normal
0.0
278
Normal
0.0
984
Normal
0.0
412
Normal
0.0
488
Normal
0.0
1045
Tumor
0.0
716
Normal
0.0
862
Normal
0.0
394
Normal
0.0
477
Tumor
0.0
662
Normal
0.0
227
Tumor
0.0
484
Normal
0.0
1014
Normal
0.0
534
Normal
0.0
328
Normal
0.0
1044
Normal
0.0
435
Tumor
0.0
728
Normal
0.0
574
Normal
0.0
388
Normal
0.0
964
Normal
0.0
1043
Tumor
0.0
553
Tumor
0.0
392
Normal
0.0
642
Normal
0.0
362
Normal
0.0
714
Normal
0.0
138
Normal
0.0
474
Normal
0.0
697
Tumor
0.0
465
Tumor
0.0
955
Tumor
0.0
616
Normal
0.0
494
Normal
0.0
1016
Normal
0.0
824
Normal
0.0
1032
Normal
0.0
171
Tumor
0.0
422
Normal
0.0
391
Tumor
0.0
411
Tumor
0.0
231
Tumor
0.0
1046
Normal
0.0
914
Normal
0.0
432
Normal
0.0
112
Tumor
0.0
696
Normal
0.0
344
Normal
0.0
361
Tumor
0.0
665
Tumor
0.0
366
Normal
0.0
567
Tumor
0.0
564
Normal
0.0
332
Normal
0.0
741
Tumor
0.0
572
Normal
0.0
456
Normal
0.0
883
Tumor
0.0
672
Normal
0.0
214
Normal
0.0
937
Tumor
0.0
228
Normal
0.0
818
Normal
0.0
546
Normal
0.0
878
Normal
0.0
912
Normal
0.0
982
Normal
0.0
262
Normal
0.0
918
Normal
0.0
756
Normal
0.0
472
Normal
0.0
558
Normal
0.0
568
Normal
0.0
727
Tumor
0.0
518
Normal
-0.1
436
Normal
-0.1
433
Tumor
-0.1
723
Tumor
-0.1
686
Normal
-0.1
924
Normal
-0.1
923
Tumor
-0.1
356
Normal
-0.1
926
Normal
-0.1
136
Normal
-0.1
272
Normal
-0.1
145
Tumor
-0.1
468
Normal
-0.1
257
Tumor
-0.1
1028
Normal
-0.1
944
Normal
-0.1
443
Tumor
-0.1
526
Normal
-0.1
786
Normal
-0.1
742
Normal
-0.1
313
Tumor
-0.1
1022
Normal
-0.1
938
Normal
-0.1
128
Normal
-0.1
352
Normal
-0.1
357
Tumor
-0.1
331
Tumor
-0.1
267
Tumor
-0.1
111
Normal
-0.1
452
Normal
-0.1
222
Normal
-0.1
428
Normal
-0.1
464
Normal
-0.1
554
Normal
-0.1
1027
Tumor
-0.1
423
Tumor
-0.1
424
Normal
-0.1
448
Normal
-0.1
172
Normal
-0.1
218
Normal
-0.1
466
Normal
-0.1
261
Tumor
-0.1
187
Tumor
-0.1
911
Tumor
-0.2
162
Normal
-0.2
922
Normal
-0.2
921
Tumor
-0.2
663
Tumor
-0.2
882
Normal
-0.2
196
Normal
-0.2
722
Normal
-0.2
414
Normal
-0.2
286
Normal
-0.2
285
Tumor
-0.2
368
Normal
-0.2
354
Normal
-0.2
698
Normal
-0.2
186
Normal
-0.2
232
Normal
-0.2
664
Normal
-0.2
132
Normal
-0.2
877
Tumor
-0.2
376
Normal
-0.2
223
Tumor
-0.2
358
Normal
-0.2
517
Tumor
-0.2
1026
Normal
-0.2
258
Normal
-0.2
123
Tumor
-0.2
462
Normal
-0.2
341
Tumor
-0.2
1041
Tumor
-0.2
1025
Tumor
-0.2
148
Normal
-0.2
385
Tumor
-0.2
746
Normal
-0.2
137
Tumor
-0.2
671
Tumor
-0.2
666
Normal
-0.3
695
Tumor
-0.3
298
Normal
-0.3
113
Tumor
-0.3
482
Normal
-0.3
915
Tumor
-0.3
1013
Tumor
-0.3
451
Tumor
-0.3
367
Tumor
-0.3
426
Normal
-0.3
715
Tumor
-0.3
571
Tumor
-0.3
648
Normal
-0.3
314
Normal
-0.3
353
Tumor
-0.4
745
Tumor
-0.4
342
Normal
-0.4
953
Tumor
-0.4
965
Tumor
-0.5
981
Tumor
-0.5
351
Tumor
-0.5
393
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
