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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFPL1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
56.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
54.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
52.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
48.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
45.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
40.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
35.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFPL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
57.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
387
Tumor
1.1
1027
Tumor
0.9
395
Tumor
0.8
533
Tumor
0.8
391
Tumor
0.8
147
Tumor
0.7
925
Tumor
0.7
617
Tumor
0.7
217
Tumor
0.7
525
Tumor
0.7
341
Tumor
0.7
865
Tumor
0.7
1041
Tumor
0.7
1021
Tumor
0.6
367
Tumor
0.6
471
Tumor
0.6
221
Tumor
0.6
357
Tumor
0.6
745
Tumor
0.6
171
Tumor
0.6
141
Tumor
0.6
257
Tumor
0.6
635
Tumor
0.6
527
Tumor
0.5
937
Tumor
0.5
685
Tumor
0.5
967
Tumor
0.5
463
Tumor
0.5
1015
Tumor
0.5
665
Tumor
0.5
123
Tumor
0.5
351
Tumor
0.5
493
Tumor
0.5
222
Normal
0.5
755
Tumor
0.4
223
Tumor
0.4
185
Tumor
0.4
641
Tumor
0.4
343
Tumor
0.4
443
Tumor
0.4
218
Normal
0.4
823
Tumor
0.4
487
Tumor
0.4
913
Tumor
0.4
557
Tumor
0.3
191
Tumor
0.3
411
Tumor
0.3
627
Tumor
0.3
277
Tumor
0.3
851
Tumor
0.3
313
Tumor
0.3
1013
Tumor
0.3
452
Normal
0.3
363
Tumor
0.3
195
Tumor
0.3
451
Tumor
0.3
427
Tumor
0.3
213
Tumor
0.3
647
Tumor
0.3
267
Tumor
0.2
977
Tumor
0.2
112
Tumor
0.2
663
Tumor
0.2
672
Normal
0.2
483
Tumor
0.2
911
Tumor
0.2
283
Tumor
0.2
951
Tumor
0.2
125
Tumor
0.2
491
Tumor
0.2
285
Tumor
0.2
192
Normal
0.2
921
Tumor
0.2
196
Normal
0.2
113
Tumor
0.2
214
Normal
0.2
661
Tumor
0.2
537
Tumor
0.2
727
Tumor
0.2
227
Tumor
0.2
981
Tumor
0.2
385
Tumor
0.2
861
Tumor
0.2
957
Tumor
0.2
815
Tumor
0.2
145
Tumor
0.2
261
Tumor
0.2
477
Tumor
0.2
813
Tumor
0.2
743
Tumor
0.1
666
Normal
0.1
353
Tumor
0.1
642
Normal
0.1
573
Tumor
0.1
445
Tumor
0.1
396
Normal
0.1
535
Tumor
0.1
648
Normal
0.1
636
Normal
0.1
737
Tumor
0.1
662
Normal
0.1
983
Tumor
0.1
421
Tumor
0.1
456
Normal
0.1
383
Tumor
0.1
466
Normal
0.1
331
Tumor
0.1
413
Tumor
0.1
741
Tumor
0.1
137
Tumor
0.1
392
Normal
0.1
271
Tumor
0.1
231
Tumor
0.1
465
Tumor
0.1
817
Tumor
0.1
1025
Tumor
0.0
128
Normal
0.0
368
Normal
0.0
435
Tumor
0.0
468
Normal
0.0
232
Normal
0.0
297
Tumor
0.0
393
Tumor
0.0
388
Normal
0.0
361
Tumor
0.0
394
Normal
0.0
376
Normal
0.0
618
Normal
0.0
664
Normal
0.0
375
Tumor
0.0
124
Normal
0.0
311
Tumor
0.0
461
Tumor
0.0
433
Tumor
0.0
464
Normal
0.0
814
Normal
0.0
135
Tumor
0.0
873
Tumor
0.0
138
Normal
0.0
567
Tumor
0.0
114
Normal
0.0
515
Tumor
0.0
386
Normal
0.0
111
Normal
0.0
332
Normal
0.0
327
Tumor
-0.1
268
Normal
-0.1
298
Normal
-0.1
342
Normal
-0.1
278
Normal
-0.1
422
Normal
-0.1
963
Tumor
-0.1
423
Tumor
-0.1
126
Normal
-0.1
365
Tumor
-0.1
446
Normal
-0.1
258
Normal
-0.1
127
Tumor
-0.1
497
Tumor
-0.1
187
Tumor
-0.1
1043
Tumor
-0.1
366
Normal
-0.1
455
Tumor
-0.1
161
Tumor
-0.1
425
Tumor
-0.1
1031
Tumor
-0.1
428
Normal
-0.1
426
Normal
-0.1
1028
Normal
-0.1
356
Normal
-0.1
344
Normal
-0.1
553
Tumor
-0.1
938
Normal
-0.1
414
Normal
-0.1
914
Normal
-0.1
358
Normal
-0.2
262
Normal
-0.2
867
Tumor
-0.2
671
Tumor
-0.2
355
Tumor
-0.2
955
Tumor
-0.2
568
Normal
-0.2
362
Normal
-0.2
211
Tumor
-0.2
352
Normal
-0.2
474
Normal
-0.2
878
Normal
-0.2
424
Normal
-0.2
314
Normal
-0.2
615
Tumor
-0.2
874
Normal
-0.2
142
Normal
-0.2
272
Normal
-0.2
956
Normal
-0.2
312
Normal
-0.2
923
Tumor
-0.2
436
Normal
-0.2
746
Normal
-0.2
883
Tumor
-0.2
136
Normal
-0.2
545
Tumor
-0.2
492
Normal
-0.2
148
Normal
-0.2
744
Normal
-0.2
628
Normal
-0.2
131
Tumor
-0.2
965
Tumor
-0.2
616
Normal
-0.2
564
Normal
-0.2
975
Tumor
-0.2
572
Normal
-0.2
354
Normal
-0.2
952
Normal
-0.2
434
Normal
-0.2
162
Normal
-0.2
431
Tumor
-0.3
462
Normal
-0.3
132
Normal
-0.3
412
Normal
-0.3
534
Normal
-0.3
482
Normal
-0.3
384
Normal
-0.3
186
Normal
-0.3
857
Tumor
-0.3
738
Normal
-0.3
728
Normal
-0.3
574
Normal
-0.3
188
Normal
-0.3
228
Normal
-0.3
444
Normal
-0.3
432
Normal
-0.3
1016
Normal
-0.3
328
Normal
-0.3
558
Normal
-0.3
481
Tumor
-0.3
554
Normal
-0.3
478
Normal
-0.3
172
Normal
-0.3
146
Normal
-0.3
528
Normal
-0.3
415
Tumor
-0.3
538
Normal
-0.3
484
Normal
-0.3
944
Normal
-0.4
917
Tumor
-0.4
953
Tumor
-0.4
467
Tumor
-0.4
563
Tumor
-0.4
877
Tumor
-0.4
715
Tumor
-0.4
472
Normal
-0.4
858
Normal
-0.4
982
Normal
-0.4
966
Normal
-0.4
816
Normal
-0.4
862
Normal
-0.4
546
Normal
-0.4
1026
Normal
-0.4
866
Normal
-0.4
881
Tumor
-0.4
518
Normal
-0.4
286
Normal
-0.4
723
Tumor
-0.4
498
Normal
-0.4
212
Normal
-0.4
954
Normal
-0.4
915
Tumor
-0.5
778
Normal
-0.5
1014
Normal
-0.5
526
Normal
-0.5
777
Tumor
-0.5
224
Normal
-0.5
721
Tumor
-0.5
494
Normal
-0.5
697
Tumor
-0.5
513
Tumor
-0.5
364
Normal
-0.5
284
Normal
-0.5
523
Tumor
-0.5
976
Normal
-0.5
713
Tumor
-0.5
488
Normal
-0.5
696
Normal
-0.5
882
Normal
-0.5
742
Normal
-0.5
786
Normal
-0.5
984
Normal
-0.5
824
Normal
-0.5
884
Normal
-0.6
473
Tumor
-0.6
868
Normal
-0.6
818
Normal
-0.6
416
Normal
-0.6
852
Normal
-0.6
698
Normal
-0.6
943
Tumor
-0.6
918
Normal
-0.6
924
Normal
-0.6
864
Normal
-0.6
722
Normal
-0.6
724
Normal
-0.6
756
Normal
-0.6
1022
Normal
-0.6
447
Tumor
-0.6
785
Tumor
-0.6
1045
Tumor
-0.6
922
Normal
-0.7
448
Normal
-0.7
926
Normal
-0.7
517
Tumor
-0.7
524
Normal
-0.7
516
Normal
-0.7
695
Tumor
-0.7
1042
Normal
-0.7
571
Tumor
-0.7
686
Normal
-0.7
978
Normal
-0.7
863
Tumor
-0.7
968
Normal
-0.8
714
Normal
-0.8
514
Normal
-0.8
912
Normal
-0.8
716
Normal
-0.8
964
Normal
-0.8
1032
Normal
-0.9
916
Normal
-1.0
1044
Normal
-1.0
536
Normal
-1.0
958
Normal
-1.0
1046
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
