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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A45 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A45 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
137
Tumor
1.5
815
Tumor
1.3
737
Tumor
1.1
513
Tumor
1.0
515
Tumor
0.9
663
Tumor
0.9
727
Tumor
0.8
533
Tumor
0.8
563
Tumor
0.7
617
Tumor
0.7
365
Tumor
0.7
258
Normal
0.7
1027
Tumor
0.7
128
Normal
0.7
357
Tumor
0.6
423
Tumor
0.6
627
Tumor
0.6
272
Normal
0.6
394
Normal
0.5
452
Normal
0.5
477
Tumor
0.5
396
Normal
0.5
446
Normal
0.5
171
Tumor
0.5
388
Normal
0.5
361
Tumor
0.5
428
Normal
0.5
424
Normal
0.4
262
Normal
0.4
434
Normal
0.4
443
Tumor
0.4
145
Tumor
0.4
672
Normal
0.4
414
Normal
0.4
422
Normal
0.4
114
Normal
0.4
462
Normal
0.4
878
Normal
0.4
343
Tumor
0.4
445
Tumor
0.4
865
Tumor
0.4
392
Normal
0.4
426
Normal
0.4
268
Normal
0.4
436
Normal
0.3
464
Normal
0.3
664
Normal
0.3
386
Normal
0.3
111
Normal
0.3
161
Tumor
0.3
312
Normal
0.3
1026
Normal
0.3
286
Normal
0.3
482
Normal
0.3
147
Tumor
0.3
528
Normal
0.3
136
Normal
0.3
864
Normal
0.3
232
Normal
0.3
126
Normal
0.3
278
Normal
0.3
983
Tumor
0.3
141
Tumor
0.3
497
Tumor
0.3
914
Normal
0.3
195
Tumor
0.3
221
Tumor
0.3
982
Normal
0.3
863
Tumor
0.3
1016
Normal
0.2
955
Tumor
0.2
461
Tumor
0.2
435
Tumor
0.2
868
Normal
0.2
471
Tumor
0.2
1028
Normal
0.2
362
Normal
0.2
851
Tumor
0.2
466
Normal
0.2
186
Normal
0.2
341
Tumor
0.2
444
Normal
0.2
431
Tumor
0.2
332
Normal
0.2
142
Normal
0.2
866
Normal
0.2
526
Normal
0.2
196
Normal
0.2
778
Normal
0.2
328
Normal
0.2
472
Normal
0.2
618
Normal
0.2
465
Tumor
0.2
1031
Tumor
0.2
823
Tumor
0.2
432
Normal
0.2
271
Tumor
0.2
218
Normal
0.2
925
Tumor
0.2
648
Normal
0.2
358
Normal
0.2
468
Normal
0.2
494
Normal
0.2
546
Normal
0.2
738
Normal
0.2
662
Normal
0.1
421
Tumor
0.1
427
Tumor
0.1
527
Tumor
0.1
642
Normal
0.1
728
Normal
0.1
376
Normal
0.1
112
Tumor
0.1
463
Tumor
0.1
356
Normal
0.1
742
Normal
0.1
984
Normal
0.1
874
Normal
0.1
481
Tumor
0.1
1025
Tumor
0.1
474
Normal
0.1
131
Tumor
0.1
314
Normal
0.1
383
Tumor
0.1
366
Normal
0.1
478
Normal
0.1
534
Normal
0.1
185
Tumor
0.1
387
Tumor
0.1
416
Normal
0.1
148
Normal
0.1
354
Normal
0.1
777
Tumor
0.1
666
Normal
0.1
342
Normal
0.1
558
Normal
0.1
135
Tumor
0.1
572
Normal
0.1
557
Tumor
0.1
277
Tumor
0.1
222
Normal
0.1
978
Normal
0.1
918
Normal
0.1
723
Tumor
0.0
124
Normal
0.0
814
Normal
0.0
132
Normal
0.0
862
Normal
0.0
696
Normal
0.0
138
Normal
0.0
212
Normal
0.0
162
Normal
0.0
456
Normal
0.0
395
Tumor
0.0
488
Normal
0.0
191
Tumor
0.0
313
Tumor
0.0
217
Tumor
0.0
298
Normal
0.0
353
Tumor
0.0
564
Normal
0.0
267
Tumor
0.0
498
Normal
0.0
714
Normal
0.0
223
Tumor
0.0
746
Normal
0.0
483
Tumor
0.0
228
Normal
0.0
716
Normal
0.0
518
Normal
0.0
411
Tumor
0.0
721
Tumor
0.0
883
Tumor
0.0
368
Normal
0.0
364
Normal
0.0
635
Tumor
0.0
214
Normal
0.0
127
Tumor
-0.1
922
Normal
-0.1
615
Tumor
-0.1
412
Normal
-0.1
952
Normal
-0.1
331
Tumor
-0.1
188
Normal
-0.1
484
Normal
-0.1
413
Tumor
-0.1
873
Tumor
-0.1
524
Normal
-0.1
514
Normal
-0.1
352
Normal
-0.1
172
Normal
-0.1
1013
Tumor
-0.1
284
Normal
-0.1
824
Normal
-0.1
1022
Normal
-0.1
616
Normal
-0.1
1041
Tumor
-0.1
926
Normal
-0.1
146
Normal
-0.1
433
Tumor
-0.1
123
Tumor
-0.1
1014
Normal
-0.1
921
Tumor
-0.1
698
Normal
-0.1
125
Tumor
-0.1
384
Normal
-0.1
722
Normal
-0.1
628
Normal
-0.1
745
Tumor
-0.1
813
Tumor
-0.1
231
Tumor
-0.1
852
Normal
-0.1
285
Tumor
-0.2
537
Tumor
-0.2
756
Normal
-0.2
574
Normal
-0.2
261
Tumor
-0.2
492
Normal
-0.2
786
Normal
-0.2
493
Tumor
-0.2
1032
Normal
-0.2
516
Normal
-0.2
636
Normal
-0.2
686
Normal
-0.2
568
Normal
-0.2
192
Normal
-0.2
1021
Tumor
-0.2
523
Tumor
-0.2
213
Tumor
-0.2
487
Tumor
-0.2
881
Tumor
-0.2
375
Tumor
-0.2
867
Tumor
-0.2
816
Normal
-0.2
641
Tumor
-0.2
858
Normal
-0.2
425
Tumor
-0.2
297
Tumor
-0.2
224
Normal
-0.2
944
Normal
-0.3
785
Tumor
-0.3
538
Normal
-0.3
671
Tumor
-0.3
744
Normal
-0.3
882
Normal
-0.3
554
Normal
-0.3
567
Tumor
-0.3
451
Tumor
-0.3
915
Tumor
-0.3
525
Tumor
-0.3
355
Tumor
-0.3
517
Tumor
-0.3
448
Normal
-0.3
344
Normal
-0.3
647
Tumor
-0.3
923
Tumor
-0.3
913
Tumor
-0.3
755
Tumor
-0.3
1043
Tumor
-0.3
916
Normal
-0.4
327
Tumor
-0.4
817
Tumor
-0.4
491
Tumor
-0.4
818
Normal
-0.4
924
Normal
-0.4
227
Tumor
-0.4
573
Tumor
-0.4
695
Tumor
-0.4
956
Normal
-0.4
1042
Normal
-0.4
938
Normal
-0.4
1015
Tumor
-0.4
367
Tumor
-0.5
467
Tumor
-0.5
187
Tumor
-0.5
113
Tumor
-0.5
391
Tumor
-0.5
917
Tumor
-0.5
1046
Normal
-0.5
455
Tumor
-0.5
743
Tumor
-0.5
857
Tumor
-0.5
1045
Tumor
-0.5
257
Tumor
-0.5
741
Tumor
-0.5
447
Tumor
-0.5
981
Tumor
-0.5
1044
Normal
-0.6
968
Normal
-0.6
535
Tumor
-0.6
954
Normal
-0.6
385
Tumor
-0.6
415
Tumor
-0.6
393
Tumor
-0.6
473
Tumor
-0.7
713
Tumor
-0.7
943
Tumor
-0.7
545
Tumor
-0.7
977
Tumor
-0.7
685
Tumor
-0.7
363
Tumor
-0.7
976
Normal
-0.7
966
Normal
-0.7
311
Tumor
-0.7
884
Normal
-0.8
571
Tumor
-0.8
964
Normal
-0.8
975
Tumor
-0.8
211
Tumor
-0.9
553
Tumor
-0.9
283
Tumor
-0.9
911
Tumor
-0.9
937
Tumor
-0.9
953
Tumor
-1.0
912
Normal
-1.0
861
Tumor
-1.0
877
Tumor
-1.0
724
Normal
-1.0
661
Tumor
-1.0
951
Tumor
-1.1
536
Normal
-1.1
351
Tumor
-1.1
715
Tumor
-1.1
967
Tumor
-1.2
957
Tumor
-1.2
958
Normal
-1.3
697
Tumor
-1.3
665
Tumor
-1.5
965
Tumor
-1.7
963
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
