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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STX5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
69.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
51.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
45.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
41.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
41.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
38.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
38.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
34.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STX5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.4
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
75.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
58.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
51.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
37.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
1.3
123
Tumor
0.9
865
Tumor
0.8
527
Tumor
0.8
913
Tumor
0.7
487
Tumor
0.7
477
Tumor
0.7
533
Tumor
0.7
813
Tumor
0.6
921
Tumor
0.6
727
Tumor
0.6
863
Tumor
0.6
227
Tumor
0.6
815
Tumor
0.6
471
Tumor
0.5
1015
Tumor
0.5
923
Tumor
0.5
1027
Tumor
0.5
857
Tumor
0.5
755
Tumor
0.5
483
Tumor
0.5
481
Tumor
0.5
415
Tumor
0.5
741
Tumor
0.4
327
Tumor
0.4
777
Tumor
0.4
451
Tumor
0.4
951
Tumor
0.4
1041
Tumor
0.4
557
Tumor
0.4
513
Tumor
0.4
617
Tumor
0.4
553
Tumor
0.4
981
Tumor
0.4
211
Tumor
0.4
615
Tumor
0.4
112
Tumor
0.4
635
Tumor
0.4
113
Tumor
0.4
925
Tumor
0.4
285
Tumor
0.4
223
Tumor
0.3
357
Tumor
0.3
922
Normal
0.3
911
Tumor
0.3
814
Normal
0.3
745
Tumor
0.3
665
Tumor
0.3
873
Tumor
0.3
523
Tumor
0.3
955
Tumor
0.3
353
Tumor
0.3
431
Tumor
0.3
963
Tumor
0.3
861
Tumor
0.3
977
Tumor
0.3
217
Tumor
0.3
1045
Tumor
0.3
1013
Tumor
0.3
524
Normal
0.3
463
Tumor
0.3
135
Tumor
0.3
868
Normal
0.3
954
Normal
0.3
443
Tumor
0.3
1021
Tumor
0.2
526
Normal
0.2
967
Tumor
0.2
554
Normal
0.2
518
Normal
0.2
696
Normal
0.2
1014
Normal
0.2
685
Tumor
0.2
267
Tumor
0.2
721
Tumor
0.2
918
Normal
0.2
447
Tumor
0.2
978
Normal
0.2
355
Tumor
0.2
926
Normal
0.2
427
Tumor
0.2
271
Tumor
0.2
493
Tumor
0.2
558
Normal
0.2
528
Normal
0.2
461
Tumor
0.2
488
Normal
0.2
786
Normal
0.2
697
Tumor
0.2
171
Tumor
0.2
737
Tumor
0.2
141
Tumor
0.2
515
Tumor
0.2
1025
Tumor
0.2
365
Tumor
0.2
964
Normal
0.2
866
Normal
0.2
395
Tumor
0.2
647
Tumor
0.2
473
Tumor
0.2
728
Normal
0.2
127
Tumor
0.2
147
Tumor
0.2
514
Normal
0.2
212
Normal
0.2
722
Normal
0.2
218
Normal
0.2
714
Normal
0.2
917
Tumor
0.2
538
Normal
0.2
716
Normal
0.1
221
Tumor
0.1
636
Normal
0.1
387
Tumor
0.1
944
Normal
0.1
884
Normal
0.1
411
Tumor
0.1
412
Normal
0.1
952
Normal
0.1
482
Normal
0.1
778
Normal
0.1
474
Normal
0.1
148
Normal
0.1
328
Normal
0.1
492
Normal
0.1
1046
Normal
0.1
537
Tumor
0.1
817
Tumor
0.1
535
Tumor
0.1
916
Normal
0.1
616
Normal
0.1
724
Normal
0.1
368
Normal
0.1
663
Tumor
0.1
966
Normal
0.1
686
Normal
0.1
823
Tumor
0.1
1028
Normal
0.1
185
Tumor
0.1
695
Tumor
0.1
983
Tumor
0.1
145
Tumor
0.1
445
Tumor
0.1
984
Normal
0.1
484
Normal
0.1
472
Normal
0.1
545
Tumor
0.1
915
Tumor
0.1
1043
Tumor
0.1
851
Tumor
0.1
497
Tumor
0.1
536
Normal
0.1
111
Normal
0.1
286
Normal
0.1
864
Normal
0.1
413
Tumor
0.1
618
Normal
0.1
1016
Normal
0.1
494
Normal
0.1
1031
Tumor
0.1
568
Normal
0.1
824
Normal
0.1
785
Tumor
0.1
874
Normal
0.1
283
Tumor
0.1
162
Normal
0.1
191
Tumor
0.1
641
Tumor
0.1
462
Normal
0.1
455
Tumor
0.1
498
Normal
0.1
627
Tumor
0.1
284
Normal
0.1
713
Tumor
0.1
362
Normal
0.1
124
Normal
0.1
448
Normal
0.0
228
Normal
0.0
1044
Normal
0.0
956
Normal
0.0
746
Normal
0.0
982
Normal
0.0
478
Normal
0.0
968
Normal
0.0
172
Normal
0.0
563
Tumor
0.0
161
Tumor
0.0
924
Normal
0.0
572
Normal
0.0
142
Normal
0.0
546
Normal
0.0
137
Tumor
0.0
738
Normal
0.0
1026
Normal
0.0
878
Normal
0.0
664
Normal
0.0
883
Tumor
0.0
816
Normal
0.0
467
Tumor
0.0
491
Tumor
0.0
564
Normal
0.0
958
Normal
0.0
187
Tumor
0.0
852
Normal
0.0
648
Normal
0.0
642
Normal
0.0
661
Tumor
0.0
867
Tumor
0.0
186
Normal
0.0
188
Normal
0.0
364
Normal
0.0
376
Normal
0.0
114
Normal
0.0
466
Normal
0.0
516
Normal
0.0
363
Tumor
0.0
433
Tumor
0.0
1022
Normal
0.0
126
Normal
0.0
125
Tumor
0.0
421
Tumor
0.0
912
Normal
0.0
426
Normal
0.0
858
Normal
0.0
525
Tumor
0.0
938
Normal
0.0
136
Normal
0.0
428
Normal
0.0
534
Normal
0.0
261
Tumor
0.0
356
Normal
0.0
392
Normal
0.0
882
Normal
0.0
128
Normal
0.0
756
Normal
0.0
1042
Normal
0.0
414
Normal
0.0
424
Normal
0.0
452
Normal
0.0
416
Normal
0.0
391
Tumor
0.0
224
Normal
0.0
573
Tumor
0.0
435
Tumor
0.0
881
Tumor
0.0
698
Normal
0.0
343
Tumor
0.0
672
Normal
-0.1
196
Normal
-0.1
192
Normal
-0.1
138
Normal
-0.1
628
Normal
-0.1
862
Normal
-0.1
262
Normal
-0.1
352
Normal
-0.1
422
Normal
-0.1
1032
Normal
-0.1
723
Tumor
-0.1
662
Normal
-0.1
943
Tumor
-0.1
313
Tumor
-0.1
383
Tumor
-0.1
298
Normal
-0.1
214
Normal
-0.1
446
Normal
-0.1
396
Normal
-0.1
258
Normal
-0.1
743
Tumor
-0.1
393
Tumor
-0.1
344
Normal
-0.1
354
Normal
-0.1
715
Tumor
-0.1
222
Normal
-0.1
742
Normal
-0.1
384
Normal
-0.1
268
Normal
-0.1
146
Normal
-0.1
818
Normal
-0.1
425
Tumor
-0.1
468
Normal
-0.1
456
Normal
-0.1
195
Tumor
-0.1
436
Normal
-0.1
666
Normal
-0.1
434
Normal
-0.2
375
Tumor
-0.2
311
Tumor
-0.2
361
Tumor
-0.2
965
Tumor
-0.2
131
Tumor
-0.2
272
Normal
-0.2
312
Normal
-0.2
423
Tumor
-0.2
464
Normal
-0.2
277
Tumor
-0.2
358
Normal
-0.2
278
Normal
-0.2
432
Normal
-0.2
465
Tumor
-0.2
444
Normal
-0.2
386
Normal
-0.2
957
Tumor
-0.2
574
Normal
-0.2
213
Tumor
-0.2
332
Normal
-0.2
314
Normal
-0.2
366
Normal
-0.2
232
Normal
-0.2
132
Normal
-0.2
976
Normal
-0.2
342
Normal
-0.2
914
Normal
-0.2
385
Tumor
-0.3
975
Tumor
-0.3
257
Tumor
-0.3
394
Normal
-0.3
953
Tumor
-0.3
297
Tumor
-0.3
744
Normal
-0.3
517
Tumor
-0.3
877
Tumor
-0.3
388
Normal
-0.3
331
Tumor
-0.3
231
Tumor
-0.3
351
Tumor
-0.4
341
Tumor
-0.4
571
Tumor
-0.4
367
Tumor
-0.5
567
Tumor
-0.6
671
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
