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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NXF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
66.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
55.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
50.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
47.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
47.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
44.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
37.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
37.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
32.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NXF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.5
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
109.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
87.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
83.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
78.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
78.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
73.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
73.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
73.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
69.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
69.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
68.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
68.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
66.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
61.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
59.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
58.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
55.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
54.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
52.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
52.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
52.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
52.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
51.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
50.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
49.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
48.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
47.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
45.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
44.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
43.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
43.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
42.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
40.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
0.9
743
Tumor
0.9
131
Tumor
0.8
957
Tumor
0.8
877
Tumor
0.7
537
Tumor
0.7
331
Tumor
0.7
285
Tumor
0.6
813
Tumor
0.6
967
Tumor
0.6
517
Tumor
0.6
425
Tumor
0.6
977
Tumor
0.6
523
Tumor
0.6
727
Tumor
0.6
965
Tumor
0.6
661
Tumor
0.6
1013
Tumor
0.6
355
Tumor
0.6
533
Tumor
0.6
497
Tumor
0.6
951
Tumor
0.6
211
Tumor
0.5
715
Tumor
0.5
1031
Tumor
0.5
411
Tumor
0.5
123
Tumor
0.5
351
Tumor
0.5
685
Tumor
0.5
413
Tumor
0.5
671
Tumor
0.5
427
Tumor
0.5
814
Normal
0.5
277
Tumor
0.4
535
Tumor
0.4
385
Tumor
0.4
975
Tumor
0.4
881
Tumor
0.4
817
Tumor
0.4
635
Tumor
0.4
367
Tumor
0.4
737
Tumor
0.4
1021
Tumor
0.4
313
Tumor
0.4
873
Tumor
0.4
357
Tumor
0.4
391
Tumor
0.4
665
Tumor
0.4
483
Tumor
0.4
271
Tumor
0.4
227
Tumor
0.4
921
Tumor
0.4
161
Tumor
0.4
641
Tumor
0.4
983
Tumor
0.4
487
Tumor
0.3
447
Tumor
0.3
171
Tumor
0.3
695
Tumor
0.3
147
Tumor
0.3
493
Tumor
0.3
125
Tumor
0.3
553
Tumor
0.3
387
Tumor
0.3
923
Tumor
0.3
435
Tumor
0.3
473
Tumor
0.3
463
Tumor
0.3
647
Tumor
0.3
471
Tumor
0.3
777
Tumor
0.3
527
Tumor
0.3
443
Tumor
0.3
663
Tumor
0.3
477
Tumor
0.3
917
Tumor
0.3
943
Tumor
0.3
431
Tumor
0.3
433
Tumor
0.3
185
Tumor
0.3
557
Tumor
0.3
883
Tumor
0.2
283
Tumor
0.2
112
Tumor
0.2
221
Tumor
0.2
545
Tumor
0.2
815
Tumor
0.2
963
Tumor
0.2
567
Tumor
0.2
363
Tumor
0.2
467
Tumor
0.2
297
Tumor
0.2
525
Tumor
0.2
187
Tumor
0.2
415
Tumor
0.2
697
Tumor
0.2
851
Tumor
0.2
724
Normal
0.2
491
Tumor
0.2
311
Tumor
0.2
713
Tumor
0.2
1025
Tumor
0.2
343
Tumor
0.2
375
Tumor
0.2
867
Tumor
0.2
127
Tumor
0.2
455
Tumor
0.1
461
Tumor
0.1
135
Tumor
0.1
423
Tumor
0.1
953
Tumor
0.1
113
Tumor
0.1
445
Tumor
0.1
721
Tumor
0.1
213
Tumor
0.1
465
Tumor
0.1
257
Tumor
0.1
217
Tumor
0.1
573
Tumor
0.1
863
Tumor
0.1
395
Tumor
0.1
223
Tumor
0.1
823
Tumor
0.1
393
Tumor
0.1
861
Tumor
0.1
1043
Tumor
0.1
137
Tumor
0.1
141
Tumor
0.1
341
Tumor
0.1
1041
Tumor
0.1
515
Tumor
0.1
615
Tumor
0.0
937
Tumor
0.0
741
Tumor
0.0
267
Tumor
0.0
785
Tumor
0.0
191
Tumor
0.0
513
Tumor
0.0
571
Tumor
0.0
1027
Tumor
0.0
492
Normal
0.0
146
Normal
0.0
1032
Normal
0.0
126
Normal
0.0
498
Normal
0.0
421
Tumor
0.0
686
Normal
0.0
361
Tumor
0.0
915
Tumor
0.0
925
Tumor
0.0
524
Normal
0.0
536
Normal
0.0
672
Normal
0.0
192
Normal
0.0
478
Normal
0.0
1015
Tumor
0.0
696
Normal
0.0
911
Tumor
0.0
913
Tumor
0.0
451
Tumor
0.0
716
Normal
0.0
664
Normal
0.0
516
Normal
0.0
666
Normal
0.0
142
Normal
0.0
563
Tumor
-0.1
554
Normal
-0.1
648
Normal
-0.1
858
Normal
-0.1
352
Normal
-0.1
662
Normal
-0.1
472
Normal
-0.1
353
Tumor
-0.1
745
Tumor
-0.1
145
Tumor
-0.1
984
Normal
-0.1
114
Normal
-0.1
534
Normal
-0.1
966
Normal
-0.1
132
Normal
-0.1
261
Tumor
-0.1
954
Normal
-0.1
916
Normal
-0.1
964
Normal
-0.1
481
Tumor
-0.1
383
Tumor
-0.1
558
Normal
-0.1
958
Normal
-0.1
818
Normal
-0.1
714
Normal
-0.1
124
Normal
-0.1
232
Normal
-0.1
327
Tumor
-0.1
484
Normal
-0.1
744
Normal
-0.1
138
Normal
-0.1
922
Normal
-0.1
388
Normal
-0.1
978
Normal
-0.1
1046
Normal
-0.1
786
Normal
-0.1
394
Normal
-0.1
412
Normal
-0.1
384
Normal
-0.1
1028
Normal
-0.1
572
Normal
-0.1
364
Normal
-0.1
1042
Normal
-0.1
268
Normal
-0.1
546
Normal
-0.1
1014
Normal
-0.1
924
Normal
-0.1
396
Normal
-0.1
464
Normal
-0.1
944
Normal
-0.1
456
Normal
-0.1
722
Normal
-0.1
1026
Normal
-0.1
1045
Tumor
-0.1
538
Normal
-0.1
162
Normal
-0.1
328
Normal
-0.1
494
Normal
-0.1
824
Normal
-0.1
857
Tumor
-0.1
128
Normal
-0.2
482
Normal
-0.2
968
Normal
-0.2
444
Normal
-0.2
376
Normal
-0.2
368
Normal
-0.2
518
Normal
-0.2
617
Tumor
-0.2
365
Tumor
-0.2
755
Tumor
-0.2
756
Normal
-0.2
111
Normal
-0.2
446
Normal
-0.2
462
Normal
-0.2
284
Normal
-0.2
862
Normal
-0.2
1044
Normal
-0.2
874
Normal
-0.2
448
Normal
-0.2
188
Normal
-0.2
864
Normal
-0.2
172
Normal
-0.2
926
Normal
-0.2
912
Normal
-0.2
488
Normal
-0.2
434
Normal
-0.2
231
Tumor
-0.2
344
Normal
-0.2
955
Tumor
-0.2
414
Normal
-0.2
148
Normal
-0.2
852
Normal
-0.2
564
Normal
-0.2
878
Normal
-0.2
258
Normal
-0.2
742
Normal
-0.2
976
Normal
-0.2
186
Normal
-0.2
218
Normal
-0.2
136
Normal
-0.2
392
Normal
-0.2
474
Normal
-0.2
342
Normal
-0.2
918
Normal
-0.2
723
Tumor
-0.2
386
Normal
-0.2
868
Normal
-0.2
956
Normal
-0.2
938
Normal
-0.2
224
Normal
-0.2
354
Normal
-0.2
778
Normal
-0.2
356
Normal
-0.2
422
Normal
-0.2
616
Normal
-0.2
358
Normal
-0.2
628
Normal
-0.2
574
Normal
-0.2
466
Normal
-0.2
882
Normal
-0.2
468
Normal
-0.2
1016
Normal
-0.2
627
Tumor
-0.2
262
Normal
-0.2
428
Normal
-0.2
272
Normal
-0.2
452
Normal
-0.2
1022
Normal
-0.2
426
Normal
-0.2
981
Tumor
-0.2
884
Normal
-0.2
362
Normal
-0.2
432
Normal
-0.2
196
Normal
-0.2
416
Normal
-0.2
212
Normal
-0.2
424
Normal
-0.2
526
Normal
-0.2
228
Normal
-0.3
746
Normal
-0.3
866
Normal
-0.3
222
Normal
-0.3
436
Normal
-0.3
528
Normal
-0.3
286
Normal
-0.3
312
Normal
-0.3
636
Normal
-0.3
728
Normal
-0.3
952
Normal
-0.3
195
Tumor
-0.3
698
Normal
-0.3
816
Normal
-0.3
214
Normal
-0.3
314
Normal
-0.3
618
Normal
-0.3
366
Normal
-0.3
568
Normal
-0.3
278
Normal
-0.3
982
Normal
-0.3
738
Normal
-0.3
332
Normal
-0.4
914
Normal
-0.4
514
Normal
-0.4
642
Normal
-0.4
298
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
