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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC9C is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC9C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1026
Normal
2.9
1041
Tumor
2.8
1042
Normal
2.8
1021
Tumor
2.7
1028
Normal
2.6
1027
Tumor
1.3
517
Tumor
0.9
331
Tumor
0.8
391
Tumor
0.7
573
Tumor
0.7
195
Tumor
0.7
1046
Normal
0.7
161
Tumor
0.7
451
Tumor
0.6
222
Normal
0.6
456
Normal
0.6
452
Normal
0.6
113
Tumor
0.6
523
Tumor
0.6
125
Tumor
0.6
127
Tumor
0.6
137
Tumor
0.6
815
Tumor
0.6
697
Tumor
0.6
387
Tumor
0.5
463
Tumor
0.5
553
Tumor
0.5
171
Tumor
0.5
123
Tumor
0.5
698
Normal
0.5
112
Tumor
0.5
568
Normal
0.5
498
Normal
0.5
221
Tumor
0.5
1044
Normal
0.5
214
Normal
0.5
136
Normal
0.5
217
Tumor
0.5
342
Normal
0.5
393
Tumor
0.5
482
Normal
0.5
186
Normal
0.5
641
Tumor
0.5
213
Tumor
0.5
1045
Tumor
0.5
865
Tumor
0.4
617
Tumor
0.4
663
Tumor
0.4
467
Tumor
0.4
192
Normal
0.4
145
Tumor
0.4
525
Tumor
0.4
727
Tumor
0.4
396
Normal
0.4
313
Tumor
0.4
341
Tumor
0.4
448
Normal
0.4
558
Normal
0.4
196
Normal
0.4
536
Normal
0.4
464
Normal
0.4
361
Tumor
0.4
877
Tumor
0.4
386
Normal
0.4
366
Normal
0.4
146
Normal
0.4
443
Tumor
0.4
135
Tumor
0.4
814
Normal
0.4
465
Tumor
0.3
431
Tumor
0.3
368
Normal
0.3
375
Tumor
0.3
642
Normal
0.3
357
Tumor
0.3
557
Tumor
0.3
344
Normal
0.3
546
Normal
0.3
914
Normal
0.3
191
Tumor
0.3
468
Normal
0.3
616
Normal
0.3
148
Normal
0.3
435
Tumor
0.3
131
Tumor
0.3
365
Tumor
0.3
1043
Tumor
0.3
353
Tumor
0.3
421
Tumor
0.3
863
Tumor
0.3
923
Tumor
0.3
813
Tumor
0.3
224
Normal
0.3
477
Tumor
0.3
298
Normal
0.3
132
Normal
0.3
218
Normal
0.3
358
Normal
0.3
188
Normal
0.3
925
Tumor
0.3
187
Tumor
0.3
671
Tumor
0.3
114
Normal
0.3
494
Normal
0.3
172
Normal
0.3
462
Normal
0.3
311
Tumor
0.3
534
Normal
0.3
138
Normal
0.3
376
Normal
0.2
447
Tumor
0.2
141
Tumor
0.2
422
Normal
0.2
185
Tumor
0.2
285
Tumor
0.2
367
Tumor
0.2
426
Normal
0.2
487
Tumor
0.2
527
Tumor
0.2
715
Tumor
0.2
411
Tumor
0.2
615
Tumor
0.2
466
Normal
0.2
472
Normal
0.2
474
Normal
0.2
981
Tumor
0.2
128
Normal
0.2
362
Normal
0.2
314
Normal
0.2
232
Normal
0.2
514
Normal
0.2
436
Normal
0.2
672
Normal
0.2
574
Normal
0.2
921
Tumor
0.2
524
Normal
0.2
1016
Normal
0.2
982
Normal
0.2
864
Normal
0.2
628
Normal
0.2
355
Tumor
0.2
162
Normal
0.2
414
Normal
0.2
424
Normal
0.2
882
Normal
0.2
481
Tumor
0.2
488
Normal
0.2
535
Tumor
0.2
924
Normal
0.2
394
Normal
0.2
868
Normal
0.2
286
Normal
0.2
538
Normal
0.2
327
Tumor
0.2
385
Tumor
0.2
461
Tumor
0.2
554
Normal
0.2
513
Tumor
0.2
384
Normal
0.1
862
Normal
0.1
147
Tumor
0.1
126
Normal
0.1
563
Tumor
0.1
685
Tumor
0.1
124
Normal
0.1
926
Normal
0.1
1031
Tumor
0.1
433
Tumor
0.1
352
Normal
0.1
271
Tumor
0.1
446
Normal
0.1
111
Normal
0.1
428
Normal
0.1
866
Normal
0.1
142
Normal
0.1
648
Normal
0.1
662
Normal
0.1
455
Tumor
0.1
388
Normal
0.1
922
Normal
0.1
664
Normal
0.1
666
Normal
0.1
228
Normal
0.1
955
Tumor
0.1
913
Tumor
0.1
491
Tumor
0.1
851
Tumor
0.1
944
Normal
0.1
956
Normal
0.1
564
Normal
0.1
817
Tumor
0.1
567
Tumor
0.1
444
Normal
0.1
343
Tumor
0.1
824
Normal
0.1
392
Normal
0.1
277
Tumor
0.1
332
Normal
0.1
278
Normal
0.1
968
Normal
0.1
1022
Normal
0.1
383
Tumor
0.1
432
Normal
0.1
483
Tumor
0.1
434
Normal
0.1
728
Normal
0.1
976
Normal
0.1
964
Normal
0.1
743
Tumor
0.0
966
Normal
0.0
618
Normal
0.0
395
Tumor
0.0
737
Tumor
0.0
484
Normal
0.0
416
Normal
0.0
918
Normal
0.0
363
Tumor
0.0
545
Tumor
0.0
647
Tumor
0.0
518
Normal
0.0
1013
Tumor
0.0
423
Tumor
0.0
312
Normal
0.0
356
Normal
0.0
915
Tumor
0.0
526
Normal
0.0
873
Tumor
0.0
952
Normal
0.0
816
Normal
0.0
954
Normal
0.0
912
Normal
0.0
878
Normal
0.0
297
Tumor
N/A
257
Tumor
0.0
258
Normal
0.0
354
Normal
0.0
874
Normal
0.0
445
Tumor
0.0
713
Tumor
0.0
958
Normal
0.0
696
Normal
0.0
627
Tumor
0.0
515
Tumor
0.0
364
Normal
0.0
916
Normal
0.0
572
Normal
0.0
636
Normal
0.0
938
Normal
0.0
261
Tumor
0.0
284
Normal
0.0
412
Normal
0.0
413
Tumor
0.0
661
Tumor
0.0
742
Normal
-0.1
741
Tumor
-0.1
415
Tumor
-0.1
883
Tumor
-0.1
493
Tumor
-0.1
867
Tumor
-0.1
665
Tumor
-0.1
881
Tumor
-0.1
427
Tumor
-0.1
744
Normal
-0.1
516
Normal
-0.1
537
Tumor
-0.1
478
Normal
-0.1
745
Tumor
-0.1
917
Tumor
-0.1
724
Normal
-0.1
858
Normal
-0.1
635
Tumor
-0.1
984
Normal
-0.1
884
Normal
-0.1
212
Normal
-0.1
328
Normal
-0.1
861
Tumor
-0.1
716
Normal
-0.1
756
Normal
-0.1
1025
Tumor
-0.1
1014
Normal
-0.1
528
Normal
-0.1
272
Normal
-0.1
722
Normal
-0.1
746
Normal
-0.1
975
Tumor
-0.1
778
Normal
-0.1
351
Tumor
-0.1
533
Tumor
-0.1
283
Tumor
-0.1
721
Tumor
-0.1
823
Tumor
-0.1
818
Normal
-0.1
714
Normal
-0.2
978
Normal
-0.2
497
Tumor
-0.2
723
Tumor
-0.2
777
Tumor
-0.2
695
Tumor
-0.2
967
Tumor
-0.2
786
Normal
-0.2
425
Tumor
-0.2
1032
Normal
-0.2
492
Normal
-0.2
755
Tumor
-0.2
686
Normal
-0.2
857
Tumor
-0.2
471
Tumor
-0.2
943
Tumor
-0.3
953
Tumor
-0.3
785
Tumor
-0.3
965
Tumor
-0.3
852
Normal
-0.3
267
Tumor
-0.3
911
Tumor
-0.3
262
Normal
-0.3
963
Tumor
-0.3
571
Tumor
-0.3
957
Tumor
-0.3
1015
Tumor
-0.3
738
Normal
-0.3
473
Tumor
-0.3
951
Tumor
-0.3
268
Normal
-0.3
227
Tumor
-0.4
223
Tumor
-0.4
231
Tumor
-0.4
983
Tumor
-0.5
937
Tumor
-0.5
211
Tumor
-0.6
977
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
