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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FLYWCH2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
89.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
84.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
67.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
55.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
44.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
40.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
32.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FLYWCH2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
1.9
813
Tumor
1.8
785
Tumor
1.8
515
Tumor
1.7
571
Tumor
1.4
513
Tumor
1.2
527
Tumor
1.2
427
Tumor
1.2
663
Tumor
1.2
647
Tumor
1.2
357
Tumor
1.2
523
Tumor
1.2
814
Normal
1.2
355
Tumor
1.1
953
Tumor
1.0
473
Tumor
1.0
1013
Tumor
1.0
497
Tumor
1.0
977
Tumor
0.9
351
Tumor
0.9
477
Tumor
0.9
161
Tumor
0.9
423
Tumor
0.8
465
Tumor
0.8
881
Tumor
0.8
211
Tumor
0.8
525
Tumor
0.8
533
Tumor
0.8
867
Tumor
0.7
724
Normal
0.7
957
Tumor
0.7
823
Tumor
0.7
192
Normal
0.7
913
Tumor
0.7
393
Tumor
0.7
311
Tumor
0.7
975
Tumor
0.6
943
Tumor
0.6
491
Tumor
0.6
917
Tumor
0.6
573
Tumor
0.6
865
Tumor
0.6
873
Tumor
0.6
981
Tumor
0.5
697
Tumor
0.5
866
Normal
0.5
857
Tumor
0.5
478
Normal
0.5
536
Normal
0.5
415
Tumor
0.5
447
Tumor
0.5
421
Tumor
0.5
277
Tumor
0.5
363
Tumor
0.5
385
Tumor
0.5
218
Normal
0.5
387
Tumor
0.5
213
Tumor
0.5
665
Tumor
0.5
395
Tumor
0.5
863
Tumor
0.5
817
Tumor
0.5
874
Normal
0.5
877
Tumor
0.4
195
Tumor
0.4
755
Tumor
0.4
635
Tumor
0.4
983
Tumor
0.4
1027
Tumor
0.4
1031
Tumor
0.4
221
Tumor
0.4
455
Tumor
0.4
364
Normal
0.4
386
Normal
0.4
413
Tumor
0.4
391
Tumor
0.4
283
Tumor
0.4
498
Normal
0.3
341
Tumor
0.3
286
Normal
0.3
284
Normal
0.3
425
Tumor
0.3
955
Tumor
0.3
493
Tumor
0.3
741
Tumor
0.3
861
Tumor
0.3
563
Tumor
0.3
224
Normal
0.3
567
Tumor
0.3
524
Normal
0.3
483
Tumor
0.3
343
Tumor
0.3
171
Tumor
0.3
217
Tumor
0.3
285
Tumor
0.3
1032
Normal
0.3
481
Tumor
0.3
538
Normal
0.3
535
Tumor
0.3
1041
Tumor
0.3
868
Normal
0.3
923
Tumor
0.3
685
Tumor
0.3
471
Tumor
0.3
545
Tumor
0.2
984
Normal
0.2
297
Tumor
0.2
227
Tumor
0.2
223
Tumor
0.2
518
Normal
0.2
482
Normal
0.2
328
Normal
0.2
492
Normal
0.2
528
Normal
0.2
191
Tumor
0.2
516
Normal
0.2
463
Tumor
0.2
852
Normal
0.2
396
Normal
0.2
862
Normal
0.2
864
Normal
0.2
428
Normal
0.2
954
Normal
0.2
926
Normal
0.2
557
Tumor
0.2
976
Normal
0.2
937
Tumor
0.2
356
Normal
0.2
426
Normal
0.2
951
Tumor
0.2
537
Tumor
0.2
452
Normal
0.2
461
Tumor
0.2
526
Normal
0.2
412
Normal
0.2
671
Tumor
0.2
472
Normal
0.2
1015
Tumor
0.2
918
Normal
0.2
965
Tumor
0.2
388
Normal
0.2
487
Tumor
0.2
331
Tumor
0.1
916
Normal
0.1
818
Normal
0.1
462
Normal
0.1
212
Normal
0.1
958
Normal
0.1
672
Normal
0.1
956
Normal
0.1
786
Normal
0.1
1043
Tumor
0.1
383
Tumor
0.1
416
Normal
0.1
1046
Normal
0.1
878
Normal
0.1
978
Normal
0.1
422
Normal
0.1
884
Normal
0.1
554
Normal
0.1
982
Normal
0.1
424
Normal
0.1
546
Normal
0.1
922
Normal
0.1
414
Normal
0.1
313
Tumor
0.1
1044
Normal
0.1
514
Normal
0.1
222
Normal
0.0
966
Normal
0.0
1021
Tumor
0.0
698
Normal
0.0
778
Normal
0.0
1025
Tumor
0.0
628
Normal
0.0
952
Normal
0.0
1028
Normal
0.0
187
Tumor
0.0
214
Normal
0.0
185
Tumor
0.0
967
Tumor
0.0
662
Normal
0.0
1022
Normal
0.0
394
Normal
0.0
534
Normal
0.0
467
Tumor
0.0
648
Normal
0.0
1026
Normal
0.0
627
Tumor
0.0
816
Normal
0.0
964
Normal
0.0
451
Tumor
0.0
641
Tumor
0.0
924
Normal
0.0
474
Normal
-0.1
815
Tumor
-0.1
574
Normal
-0.1
553
Tumor
-0.1
196
Normal
-0.1
188
Normal
-0.1
231
Tumor
-0.1
756
Normal
-0.1
484
Normal
-0.1
1042
Normal
-0.1
228
Normal
-0.1
914
Normal
-0.1
742
Normal
-0.1
312
Normal
-0.1
666
Normal
-0.1
615
Tumor
-0.1
963
Tumor
-0.1
824
Normal
-0.1
642
Normal
-0.1
456
Normal
-0.1
883
Tumor
-0.1
572
Normal
-0.1
882
Normal
-0.1
968
Normal
-0.1
727
Tumor
-0.1
448
Normal
-0.2
1045
Tumor
-0.2
367
Tumor
-0.2
858
Normal
-0.2
636
Normal
-0.2
938
Normal
-0.2
616
Normal
-0.2
564
Normal
-0.2
392
Normal
-0.2
925
Tumor
-0.2
617
Tumor
-0.2
558
Normal
-0.2
1014
Normal
-0.2
715
Tumor
-0.2
745
Tumor
-0.2
664
Normal
-0.2
912
Normal
-0.2
618
Normal
-0.2
327
Tumor
-0.2
851
Tumor
-0.3
728
Normal
-0.3
723
Tumor
-0.3
743
Tumor
-0.3
944
Normal
-0.3
915
Tumor
-0.3
568
Normal
-0.3
744
Normal
-0.3
186
Normal
-0.3
494
Normal
-0.4
488
Normal
-0.4
468
Normal
-0.4
464
Normal
-0.4
716
Normal
-0.4
268
Normal
-0.4
278
Normal
-0.4
921
Tumor
-0.4
661
Tumor
-0.4
361
Tumor
-0.4
162
Normal
-0.4
384
Normal
-0.4
714
Normal
-0.4
271
Tumor
-0.4
696
Normal
-0.4
1016
Normal
-0.5
366
Normal
-0.5
332
Normal
-0.5
746
Normal
-0.5
261
Tumor
-0.5
298
Normal
-0.5
148
Normal
-0.5
375
Tumor
-0.5
738
Normal
-0.5
713
Tumor
-0.5
353
Tumor
-0.5
172
Normal
-0.5
686
Normal
-0.6
466
Normal
-0.6
314
Normal
-0.6
257
Tumor
-0.6
272
Normal
-0.6
362
Normal
-0.6
267
Tumor
-0.6
721
Tumor
-0.6
368
Normal
-0.7
722
Normal
-0.7
352
Normal
-0.7
911
Tumor
-0.7
354
Normal
-0.8
695
Tumor
-0.8
262
Normal
-0.8
147
Tumor
-0.8
258
Normal
-0.8
232
Normal
-0.8
376
Normal
-0.9
358
Normal
-0.9
517
Tumor
-1.0
777
Tumor
-1.0
365
Tumor
-1.1
342
Normal
-1.1
344
Normal
-1.1
737
Tumor
-1.2
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
