MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.7 nTPM
HPA Brain:25.8 nTPM
GTEx:19.7 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:39.1 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
1827 Male, age 72, unknown 25.3
2666 Male, age 74, left hemisphere 25.2
2019 Male, age 18, unknown 24.7
2828 Female, age 72, unknown 24.2
2586 Male, age 75, left hemisphere 22.9
2219 Male, age 76, both hemispheres 21.6
2411 Female, age 72, unknown 21.3
1830 Male, age 51, unknown 20.4
1833 Male, age 53, unknown 18.6
1870 Female, age 42, unknown 18.1
Dorsal raphe nucleus
nTPM: 19.4
2298 Female, age 72, unknown 28.0
2016 Female, age 72, unknown 19.0
1828 Male, age 53, unknown 18.4
2047 Male, age 72, unknown 15.9
2750 Male, age 76, both hemispheres 15.6
Inferior colliculus
nTPM: 22.4
2097 Female, age 72, unknown 26.3
1890 Male, age 53, unknown 21.9
1848 Female, age 42, unknown 21.7
2849 Male, age 72, unknown 19.8
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Periaquaductal grey, anterior
nTPM: 25.8
2502 Female, age 75, unknown 28.6
1795 Male, age 51, unknown 26.0
1947 Male, age 18, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 17.4
2464 Female, age 72, unknown 18.1
1840 Male, age 53, unknown 17.9
1831 Male, age 72, unknown 16.9
2850 Male, age 76, both hemispheres 16.6
Periaquaductal grey, lateral
nTPM: 19.1
2053 Male, age 18, unknown 21.2
2272 Male, age 74, both hemispheres 18.7
2140 Male, age 76, both hemispheres 17.4
Pretectal area
nTPM: 24.4
1944 Female, age 72, unknown 28.4
1816 Male, age 51, unknown 28.2
2007 Male, age 72, unknown 28.2
2667 Female, age 75, unknown 28.0
1817 Female, age 42, unknown 26.5
1815 Male, age 53, unknown 25.6
2273 Male, age 74, both hemispheres 24.9
2316 Male, age 76, right hemisphere 20.7
2407 Male, age 75, both hemispheres 20.1
2825 Male, age 18, unknown 19.4
2224 Female, age 72, unknown 18.4
Red nucleus
nTPM: 22.7
2503 Female, age 72, unknown 29.0
2785 Male, age 18, unknown 28.0
2227 Male, age 72, unknown 26.2
2588 Male, age 74, left hemisphere 24.1
2769 Male, age 72, unknown 23.4
1954 Female, age 42, unknown 22.8
1865 Male, age 51, unknown 21.9
1904 Male, age 53, unknown 21.1
1821 Female, age 72, unknown 20.5
2823 Male, age 76, right hemisphere 19.1
2584 Male, age 75, left hemisphere 18.8
2725 Female, age 75, unknown 17.8
Substantia nigra
nTPM: 18.7
2665 Male, age 74, both hemispheres 25.6
1889 Female, age 72, unknown 23.8
2583 Male, age 75, right hemisphere 22.1
2590 Female, age 75, unknown 19.5
1851 Male, age 51, unknown 18.9
1916 Female, age 42, unknown 18.8
1941 Male, age 53, unknown 18.3
2699 Male, age 18, unknown 15.1
2241 Male, age 72, unknown 13.4
2409 Female, age 72, unknown 11.3
Superior colliculus
nTPM: 23.4
2087 Female, age 72, unknown 28.9
1796 Male, age 53, unknown 27.8
1995 Male, age 72, unknown 26.4
2664 Male, age 75, both hemispheres 25.9
2261 Male, age 18, unknown 25.0
1839 Male, age 51, unknown 22.5
2668 Female, age 75, unknown 21.0
1913 Female, age 42, unknown 20.9
1895 Male, age 76, right hemisphere 17.9
2587 Male, age 74, left hemisphere 17.9
Ventral tegmental area
nTPM: 18.6
2410 Female, age 72, unknown 20.6
1915 Female, age 42, unknown 19.7
2223 Female, age 72, unknown 18.7
2021 Male, age 53, unknown 18.5
1942 Male, age 51, unknown 17.3
2218 Male, age 76, both hemispheres 16.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.7
Samples: 139

Max nTPM: 39.1
Min nTPM: 9.7
Std nTPM: 5.3
Median nTPM: 18.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 34.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 33.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 32.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 32.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 31.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 31.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 30.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 29.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 27.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 27.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.5
Sample A Female 10.4
Sample B Female 9.3
Sample C Male 9.2
Sample D Male 8.5
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.2
Sample A Female 13.2
Sample B Female 10.2
Sample C Male 15.4
Sample D Male 10.2
Periaqueductal gray
nTPM: 7.7
Samples: 3

Max nTPM: 8.2
Min nTPM: 6.7
Sample B Female 8.2
Sample C Male 8.2
Sample D Male 6.7
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.9
Sample A Female 13.8
Sample B Female 16.5
Sample C Male 15.4
Sample D Male 11.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 41.6
Min nTPM: 36.7
Sample A Male 41.6
Sample B Male 36.7
Sample C Female 38.9
Sample D Female 39.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69980196 Antisense, RP_050512_04_A11, Mouse strain C57BL/6J (56 days, male) 2.1

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