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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CXCL16 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
369.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
244.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
225.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
215.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
209.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
208.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
182.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
164.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
163.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
160.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
159.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
151.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
142.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
140.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
132.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
129.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
121.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
120.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
117.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
114.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
113.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
109.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
103.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
93.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
92.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
90.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
90.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
89.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
89.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
87.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
87.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
86.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
82.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
82.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
79.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
79.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
71.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
70.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
69.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
69.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
68.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
68.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
68.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
67.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
66.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
64.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
64.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
64.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
61.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
60.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
60.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
56.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
54.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
51.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
51.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
50.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
49.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
48.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
48.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
46.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
46.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
44.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
43.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
38.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
30.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CXCL16 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.8
Number of samples
231
Samples
Sample
Description
TPM
DO45121
0 years, male, NA, stage:3, alive, 1530 days
228.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
210.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
177.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
123.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
120.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
116.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
100.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
84.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
71.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
68.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
65.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
62.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
61.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
60.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
54.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
52.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
52.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
51.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
38.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
37.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
3.3
813
Tumor
3.1
951
Tumor
1.8
641
Tumor
1.6
635
Tumor
1.3
343
Tumor
1.1
227
Tumor
0.9
1021
Tumor
0.8
917
Tumor
0.7
536
Normal
0.6
817
Tumor
0.6
354
Normal
0.6
955
Tumor
0.6
823
Tumor
0.6
814
Normal
0.6
1044
Normal
0.5
746
Normal
0.5
367
Tumor
0.5
535
Tumor
0.5
492
Normal
0.5
344
Normal
0.4
352
Normal
0.4
383
Tumor
0.4
815
Tumor
0.4
1042
Normal
0.4
937
Tumor
0.4
745
Tumor
0.4
755
Tumor
0.4
956
Normal
0.4
493
Tumor
0.3
368
Normal
0.3
491
Tumor
0.3
944
Normal
0.3
1025
Tumor
0.3
642
Normal
0.3
351
Tumor
0.3
1031
Tumor
0.3
498
Normal
0.3
538
Normal
0.3
923
Tumor
0.3
487
Tumor
0.3
618
Normal
0.2
221
Tumor
0.2
361
Tumor
0.2
954
Normal
0.2
1046
Normal
0.2
777
Tumor
0.2
494
Normal
0.2
462
Normal
0.2
851
Tumor
0.2
533
Tumor
0.2
478
Normal
0.2
953
Tumor
0.1
857
Tumor
0.1
1028
Normal
0.1
636
Normal
0.1
341
Tumor
0.1
214
Normal
0.1
223
Tumor
0.1
196
Normal
0.1
448
Normal
0.1
921
Tumor
0.1
358
Normal
0.1
1026
Normal
0.1
1022
Normal
0.1
353
Tumor
0.1
1032
Normal
0.1
192
Normal
0.1
285
Tumor
0.1
342
Normal
0.1
461
Tumor
0.1
482
Normal
0.0
283
Tumor
0.0
365
Tumor
0.0
628
Normal
0.0
778
Normal
0.0
217
Tumor
0.0
617
Tumor
0.0
211
Tumor
0.0
474
Normal
0.0
375
Tumor
0.0
384
Normal
0.0
447
Tumor
0.0
484
Normal
0.0
818
Normal
-0.1
852
Normal
-0.1
357
Tumor
-0.1
481
Tumor
-0.1
366
Normal
-0.1
1045
Tumor
-0.1
918
Normal
-0.1
497
Tumor
-0.1
471
Tumor
-0.1
816
Normal
-0.1
483
Tumor
-0.1
858
Normal
-0.1
1043
Tumor
-0.1
488
Normal
-0.1
938
Normal
-0.1
943
Tumor
-0.1
824
Normal
-0.1
195
Tumor
-0.2
1041
Tumor
-0.2
1027
Tumor
-0.2
472
Normal
-0.2
191
Tumor
-0.2
224
Normal
-0.2
916
Normal
-0.2
222
Normal
-0.2
213
Tumor
-0.2
376
Normal
-0.2
362
Normal
-0.2
228
Normal
-0.2
473
Tumor
-0.2
553
Tumor
-0.3
477
Tumor
-0.3
218
Normal
-0.3
924
Normal
-0.3
925
Tumor
-0.3
212
Normal
-0.3
785
Tumor
-0.3
926
Normal
-0.3
616
Normal
-0.3
786
Normal
-0.3
527
Tumor
-0.4
284
Normal
-0.4
546
Normal
-0.5
534
Normal
-0.5
756
Normal
-0.5
286
Normal
-0.5
922
Normal
-0.5
615
Tumor
-0.6
627
Tumor
-0.6
528
Normal
-0.7
915
Tumor
-0.9
554
Normal
-1.1
545
Tumor
-1.1
537
Tumor
-1.7
231
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
952
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
