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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
71.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
53.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
52.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
46.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
43.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
41.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
40.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
31.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.1
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.3
125
Tumor
1.2
1013
Tumor
0.9
967
Tumor
0.9
127
Tumor
0.9
277
Tumor
0.9
113
Tumor
0.8
965
Tumor
0.8
112
Tumor
0.7
171
Tumor
0.7
126
Normal
0.7
313
Tumor
0.7
161
Tumor
0.7
661
Tumor
0.7
114
Normal
0.7
213
Tumor
0.6
385
Tumor
0.6
351
Tumor
0.6
128
Normal
0.6
221
Tumor
0.6
435
Tumor
0.6
983
Tumor
0.6
411
Tumor
0.6
977
Tumor
0.6
136
Normal
0.6
573
Tumor
0.6
391
Tumor
0.5
192
Normal
0.5
124
Normal
0.5
671
Tumor
0.5
111
Normal
0.5
433
Tumor
0.5
145
Tumor
0.5
665
Tumor
0.5
957
Tumor
0.5
217
Tumor
0.4
132
Normal
0.4
395
Tumor
0.4
271
Tumor
0.4
388
Normal
0.4
331
Tumor
0.4
394
Normal
0.4
135
Tumor
0.4
663
Tumor
0.4
267
Tumor
0.4
224
Normal
0.4
1015
Tumor
0.4
743
Tumor
0.4
975
Tumor
0.3
526
Normal
0.3
571
Tumor
0.3
497
Tumor
0.3
376
Normal
0.3
361
Tumor
0.3
185
Tumor
0.3
431
Tumor
0.3
641
Tumor
0.3
195
Tumor
0.3
444
Normal
0.3
396
Normal
0.3
813
Tumor
0.3
141
Tumor
0.3
386
Normal
0.3
914
Normal
0.3
434
Normal
0.3
131
Tumor
0.3
297
Tumor
0.3
188
Normal
0.3
231
Tumor
0.3
567
Tumor
0.3
191
Tumor
0.3
343
Tumor
0.3
913
Tumor
0.3
557
Tumor
0.3
944
Normal
0.3
963
Tumor
0.3
937
Tumor
0.3
187
Tumor
0.2
814
Normal
0.2
635
Tumor
0.2
867
Tumor
0.2
384
Normal
0.2
392
Normal
0.2
443
Tumor
0.2
815
Tumor
0.2
332
Normal
0.2
222
Normal
0.2
954
Normal
0.2
147
Tumor
0.2
432
Normal
0.2
214
Normal
0.2
563
Tumor
0.2
186
Normal
0.2
146
Normal
0.2
357
Tumor
0.2
664
Normal
0.2
863
Tumor
0.2
981
Tumor
0.2
943
Tumor
0.2
938
Normal
0.2
911
Tumor
0.2
912
Normal
0.2
744
Normal
0.2
467
Tumor
0.2
172
Normal
0.2
463
Tumor
0.2
285
Tumor
0.2
368
Normal
0.2
196
Normal
0.1
232
Normal
0.1
874
Normal
0.1
721
Tumor
0.1
393
Tumor
0.1
468
Normal
0.1
672
Normal
0.1
456
Normal
0.1
162
Normal
0.1
436
Normal
0.1
387
Tumor
0.1
877
Tumor
0.1
341
Tumor
0.1
858
Normal
0.1
866
Normal
0.1
311
Tumor
0.1
283
Tumor
0.1
446
Normal
0.1
666
Normal
0.1
138
Normal
0.1
365
Tumor
0.1
148
Normal
0.1
951
Tumor
0.1
342
Normal
0.1
257
Tumor
0.1
878
Normal
0.1
465
Tumor
0.1
452
Normal
0.1
272
Normal
0.1
955
Tumor
0.1
268
Normal
0.1
882
Normal
0.1
218
Normal
0.1
445
Tumor
0.1
851
Tumor
0.1
817
Tumor
0.1
312
Normal
0.1
662
Normal
0.1
314
Normal
0.1
956
Normal
0.1
881
Tumor
0.1
464
Normal
0.1
884
Normal
0.0
862
Normal
0.0
262
Normal
0.0
278
Normal
0.0
493
Tumor
0.0
648
Normal
0.0
864
Normal
0.0
647
Tumor
0.0
137
Tumor
0.0
722
Normal
0.0
228
Normal
0.0
742
Normal
0.0
1021
Tumor
0.0
517
Tumor
0.0
818
Normal
0.0
461
Tumor
0.0
286
Normal
0.0
353
Tumor
0.0
724
Normal
0.0
883
Tumor
0.0
261
Tumor
0.0
344
Normal
0.0
223
Tumor
0.0
227
Tumor
0.0
615
Tumor
0.0
865
Tumor
0.0
451
Tumor
0.0
358
Normal
0.0
284
Normal
0.0
1031
Tumor
-0.1
574
Normal
-0.1
354
Normal
-0.1
466
Normal
-0.1
352
Normal
-0.1
487
Tumor
-0.1
617
Tumor
-0.1
966
Normal
-0.1
852
Normal
-0.1
366
Normal
-0.1
298
Normal
-0.1
534
Normal
-0.1
258
Normal
-0.1
627
Tumor
-0.1
777
Tumor
-0.1
1043
Tumor
-0.1
723
Tumor
-0.1
741
Tumor
-0.1
982
Normal
-0.1
142
Normal
-0.1
362
Normal
-0.2
537
Tumor
-0.2
546
Normal
-0.2
824
Normal
-0.2
564
Normal
-0.2
984
Normal
-0.2
616
Normal
-0.2
455
Tumor
-0.2
738
Normal
-0.2
518
Normal
-0.2
953
Tumor
-0.2
618
Normal
-0.2
568
Normal
-0.2
514
Normal
-0.2
528
Normal
-0.2
698
Normal
-0.2
636
Normal
-0.2
211
Tumor
-0.2
554
Normal
-0.2
524
Normal
-0.2
976
Normal
-0.2
491
Tumor
-0.2
952
Normal
-0.2
823
Tumor
-0.2
816
Normal
-0.2
462
Normal
-0.3
447
Tumor
-0.3
728
Normal
-0.3
1016
Normal
-0.3
513
Tumor
-0.3
535
Tumor
-0.3
1025
Tumor
-0.3
516
Normal
-0.3
714
Normal
-0.3
628
Normal
-0.3
964
Normal
-0.3
861
Tumor
-0.3
857
Tumor
-0.3
533
Tumor
-0.3
786
Normal
-0.3
212
Normal
-0.3
1041
Tumor
-0.3
1046
Normal
-0.3
572
Normal
-0.3
498
Normal
-0.3
715
Tumor
-0.3
745
Tumor
-0.3
873
Tumor
-0.4
697
Tumor
-0.4
525
Tumor
-0.4
923
Tumor
-0.4
968
Normal
-0.4
523
Tumor
-0.4
713
Tumor
-0.4
686
Normal
-0.4
1044
Normal
-0.4
917
Tumor
-0.4
925
Tumor
-0.4
483
Tumor
-0.4
1026
Normal
-0.4
716
Normal
-0.4
642
Normal
-0.4
1014
Normal
-0.4
921
Tumor
-0.4
756
Normal
-0.4
1028
Normal
-0.4
538
Normal
-0.4
1027
Tumor
-0.4
727
Tumor
-0.4
868
Normal
-0.5
1045
Tumor
-0.5
737
Tumor
-0.5
356
Normal
-0.5
472
Normal
-0.5
778
Normal
-0.5
515
Tumor
-0.5
695
Tumor
-0.5
545
Tumor
-0.5
685
Tumor
-0.5
383
Tumor
-0.5
478
Normal
-0.5
553
Tumor
-0.5
536
Normal
-0.5
958
Normal
-0.6
473
Tumor
-0.6
755
Tumor
-0.6
558
Normal
-0.6
696
Normal
-0.6
978
Normal
-0.6
746
Normal
-0.6
488
Normal
-0.6
416
Normal
-0.6
482
Normal
-0.6
474
Normal
-0.6
1042
Normal
-0.7
492
Normal
-0.7
471
Tumor
-0.7
527
Tumor
-0.7
328
Normal
-0.7
448
Normal
-0.7
484
Normal
-0.7
785
Tumor
-0.7
363
Tumor
-0.7
494
Normal
-0.7
367
Tumor
-0.7
481
Tumor
-0.8
922
Normal
-0.8
1032
Normal
-0.8
375
Tumor
-0.8
364
Normal
-0.8
1022
Normal
-0.8
924
Normal
-0.9
915
Tumor
-0.9
926
Normal
-0.9
327
Tumor
-0.9
477
Tumor
-0.9
415
Tumor
-0.9
918
Normal
-0.9
916
Normal
-0.9
412
Normal
-0.9
355
Tumor
-1.1
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
