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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LARP4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LARP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
231
Samples
Sample
Description
TPM
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.2
1013
Tumor
0.9
937
Tumor
0.8
965
Tumor
0.7
513
Tumor
0.7
231
Tumor
0.7
267
Tumor
0.7
533
Tumor
0.7
477
Tumor
0.7
567
Tumor
0.6
981
Tumor
0.6
1015
Tumor
0.6
327
Tumor
0.6
925
Tumor
0.6
955
Tumor
0.5
745
Tumor
0.5
123
Tumor
0.5
171
Tumor
0.5
851
Tumor
0.5
756
Normal
0.5
915
Tumor
0.5
983
Tumor
0.4
786
Normal
0.4
571
Tumor
0.4
1041
Tumor
0.4
953
Tumor
0.4
858
Normal
0.4
537
Tumor
0.4
286
Normal
0.4
755
Tumor
0.4
145
Tumor
0.4
497
Tumor
0.4
518
Normal
0.4
698
Normal
0.4
746
Normal
0.4
777
Tumor
0.4
912
Normal
0.4
525
Tumor
0.4
465
Tumor
0.4
515
Tumor
0.4
964
Normal
0.3
494
Normal
0.3
922
Normal
0.3
914
Normal
0.3
1016
Normal
0.3
938
Normal
0.3
481
Tumor
0.3
472
Normal
0.3
918
Normal
0.3
423
Tumor
0.3
615
Tumor
0.3
474
Normal
0.3
628
Normal
0.3
436
Normal
0.3
357
Tumor
0.3
924
Normal
0.3
1014
Normal
0.3
484
Normal
0.3
128
Normal
0.3
546
Normal
0.3
482
Normal
0.3
462
Normal
0.3
616
Normal
0.3
1022
Normal
0.3
367
Tumor
0.3
882
Normal
0.3
361
Tumor
0.3
228
Normal
0.3
878
Normal
0.3
1032
Normal
0.3
728
Normal
0.3
1027
Tumor
0.3
944
Normal
0.3
867
Tumor
0.3
696
Normal
0.3
618
Normal
0.3
534
Normal
0.3
446
Normal
0.3
913
Tumor
0.3
884
Normal
0.3
966
Normal
0.3
554
Normal
0.3
943
Tumor
0.3
967
Tumor
0.3
873
Tumor
0.3
132
Normal
0.3
1046
Normal
0.3
636
Normal
0.3
426
Normal
0.2
422
Normal
0.2
852
Normal
0.2
984
Normal
0.2
722
Normal
0.2
958
Normal
0.2
824
Normal
0.2
564
Normal
0.2
1026
Normal
0.2
1025
Tumor
0.2
416
Normal
0.2
968
Normal
0.2
864
Normal
0.2
1028
Normal
0.2
412
Normal
0.2
742
Normal
0.2
142
Normal
0.2
411
Tumor
0.2
222
Normal
0.2
364
Normal
0.2
978
Normal
0.2
568
Normal
0.2
874
Normal
0.2
714
Normal
0.2
557
Tumor
0.2
976
Normal
0.2
356
Normal
0.2
1042
Normal
0.2
328
Normal
0.2
982
Normal
0.2
127
Tumor
0.2
816
Normal
0.2
528
Normal
0.2
514
Normal
0.2
395
Tumor
0.2
572
Normal
0.2
862
Normal
0.2
926
Normal
0.2
278
Normal
0.2
284
Normal
0.2
488
Normal
0.2
778
Normal
0.2
355
Tumor
0.2
648
Normal
0.2
261
Tumor
0.2
818
Normal
0.2
617
Tumor
0.2
697
Tumor
0.2
642
Normal
0.2
451
Tumor
0.2
258
Normal
0.2
785
Tumor
0.2
466
Normal
0.1
435
Tumor
0.1
526
Normal
0.1
493
Tumor
0.1
952
Normal
0.1
724
Normal
0.1
114
Normal
0.1
1044
Normal
0.1
866
Normal
0.1
376
Normal
0.1
448
Normal
0.1
136
Normal
0.1
353
Tumor
0.1
861
Tumor
0.1
1021
Tumor
0.1
365
Tumor
0.1
461
Tumor
0.1
535
Tumor
0.1
956
Normal
0.1
558
Normal
0.1
574
Normal
0.1
138
Normal
0.1
424
Normal
0.1
473
Tumor
0.1
272
Normal
0.1
723
Tumor
0.1
428
Normal
0.1
738
Normal
0.1
716
Normal
0.1
672
Normal
0.1
744
Normal
0.1
868
Normal
0.1
865
Tumor
0.1
516
Normal
0.1
464
Normal
0.1
396
Normal
0.1
414
Normal
0.1
916
Normal
0.1
362
Normal
0.1
141
Tumor
0.1
195
Tumor
0.1
298
Normal
0.1
196
Normal
0.1
388
Normal
0.1
358
Normal
0.1
666
Normal
0.1
112
Tumor
0.1
212
Normal
0.1
452
Normal
0.1
227
Tumor
0.1
921
Tumor
0.1
186
Normal
0.0
368
Normal
0.0
313
Tumor
0.0
663
Tumor
0.0
664
Normal
0.0
392
Normal
0.0
314
Normal
0.0
662
Normal
0.0
257
Tumor
0.0
232
Normal
0.0
432
Normal
0.0
573
Tumor
0.0
217
Tumor
0.0
312
Normal
0.0
857
Tumor
0.0
415
Tumor
0.0
647
Tumor
0.0
146
Normal
0.0
351
Tumor
0.0
524
Normal
0.0
713
Tumor
0.0
686
Normal
0.0
366
Normal
0.0
214
Normal
0.0
923
Tumor
0.0
363
Tumor
0.0
111
Normal
0.0
883
Tumor
0.0
715
Tumor
0.0
1045
Tumor
0.0
954
Normal
0.0
977
Tumor
0.0
342
Normal
0.0
815
Tumor
0.0
498
Normal
0.0
391
Tumor
0.0
332
Normal
0.0
262
Normal
0.0
354
Normal
0.0
492
Normal
0.0
147
Tumor
-0.1
635
Tumor
-0.1
468
Normal
-0.1
456
Normal
-0.1
161
Tumor
-0.1
148
Normal
-0.1
393
Tumor
-0.1
113
Tumor
-0.1
137
Tumor
-0.1
911
Tumor
-0.1
727
Tumor
-0.1
187
Tumor
-0.1
394
Normal
-0.1
162
Normal
-0.1
384
Normal
-0.1
224
Normal
-0.1
421
Tumor
-0.1
352
Normal
-0.1
126
Normal
-0.1
627
Tumor
-0.1
387
Tumor
-0.1
721
Tumor
-0.1
172
Normal
-0.1
434
Normal
-0.1
124
Normal
-0.1
478
Normal
-0.1
863
Tumor
-0.1
218
Normal
-0.1
823
Tumor
-0.1
268
Normal
-0.1
443
Tumor
-0.1
685
Tumor
-0.2
135
Tumor
-0.2
471
Tumor
-0.2
695
Tumor
-0.2
223
Tumor
-0.2
386
Normal
-0.2
737
Tumor
-0.2
433
Tumor
-0.2
743
Tumor
-0.2
661
Tumor
-0.2
188
Normal
-0.2
467
Tumor
-0.2
538
Normal
-0.2
1031
Tumor
-0.2
536
Normal
-0.2
527
Tumor
-0.2
191
Tumor
-0.2
341
Tumor
-0.2
463
Tumor
-0.2
741
Tumor
-0.2
1043
Tumor
-0.2
425
Tumor
-0.3
444
Normal
-0.3
375
Tumor
-0.3
483
Tumor
-0.3
665
Tumor
-0.3
344
Normal
-0.3
523
Tumor
-0.3
517
Tumor
-0.3
963
Tumor
-0.3
491
Tumor
-0.3
487
Tumor
-0.3
331
Tumor
-0.3
431
Tumor
-0.3
213
Tumor
-0.3
283
Tumor
-0.4
563
Tumor
-0.4
413
Tumor
-0.4
277
Tumor
-0.4
297
Tumor
-0.4
445
Tumor
-0.4
951
Tumor
-0.4
817
Tumor
-0.4
427
Tumor
-0.4
447
Tumor
-0.4
125
Tumor
-0.4
545
Tumor
-0.4
671
Tumor
-0.5
455
Tumor
-0.5
814
Normal
-0.5
881
Tumor
-0.5
641
Tumor
-0.5
877
Tumor
-0.5
553
Tumor
-0.5
975
Tumor
-0.6
221
Tumor
-0.6
131
Tumor
-0.6
311
Tumor
-0.6
383
Tumor
-0.6
385
Tumor
-0.6
211
Tumor
-0.6
185
Tumor
-0.6
192
Normal
-0.7
813
Tumor
-0.7
917
Tumor
-0.7
285
Tumor
-0.8
343
Tumor
-0.8
271
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
