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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EMC10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
187.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
124.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
109.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
103.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
103.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
102.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
102.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
100.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
99.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
98.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
93.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
90.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
89.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
88.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
87.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
86.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
85.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
85.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
84.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
83.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
83.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
83.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
82.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
81.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
81.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
80.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
80.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
80.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
78.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
78.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
78.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
77.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
76.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
74.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
73.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
73.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
72.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
72.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
72.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
71.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
70.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
70.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
69.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
68.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
67.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
66.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
66.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
65.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
65.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
65.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
64.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
64.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
64.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
63.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
63.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
62.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
62.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
61.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
61.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
61.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
60.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
60.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
60.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
57.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
57.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
57.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
56.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
56.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
54.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
54.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
53.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
53.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
53.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
52.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
51.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
51.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
51.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
50.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
49.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
49.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
48.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
47.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
47.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
47.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
47.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
46.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
46.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
45.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
43.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
43.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
42.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
40.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
40.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
39.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
38.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.3
1013
Tumor
1.0
721
Tumor
0.9
571
Tumor
0.9
436
Normal
0.8
435
Tumor
0.8
313
Tumor
0.8
1027
Tumor
0.7
981
Tumor
0.7
481
Tumor
0.6
446
Normal
0.6
432
Normal
0.6
697
Tumor
0.6
112
Tumor
0.6
873
Tumor
0.6
863
Tumor
0.6
857
Tumor
0.6
564
Normal
0.6
937
Tumor
0.6
635
Tumor
0.6
745
Tumor
0.6
445
Tumor
0.5
434
Normal
0.5
913
Tumor
0.5
411
Tumor
0.5
851
Tumor
0.5
953
Tumor
0.5
574
Normal
0.5
685
Tumor
0.5
568
Normal
0.5
785
Tumor
0.5
977
Tumor
0.5
431
Tumor
0.5
393
Tumor
0.5
1028
Normal
0.5
627
Tumor
0.5
433
Tumor
0.4
557
Tumor
0.4
127
Tumor
0.4
572
Normal
0.4
257
Tumor
0.4
123
Tumor
0.4
414
Normal
0.4
428
Normal
0.4
452
Normal
0.4
513
Tumor
0.4
422
Normal
0.4
978
Normal
0.4
861
Tumor
0.4
426
Normal
0.4
388
Normal
0.4
387
Tumor
0.4
261
Tumor
0.4
394
Normal
0.4
227
Tumor
0.4
415
Tumor
0.4
375
Tumor
0.3
527
Tumor
0.3
1015
Tumor
0.3
616
Normal
0.3
464
Normal
0.3
351
Tumor
0.3
497
Tumor
0.3
724
Normal
0.3
665
Tumor
0.3
1042
Normal
0.3
491
Tumor
0.3
231
Tumor
0.3
983
Tumor
0.3
332
Normal
0.3
558
Normal
0.3
444
Normal
0.3
392
Normal
0.3
396
Normal
0.3
395
Tumor
0.3
615
Tumor
0.3
125
Tumor
0.3
357
Tumor
0.3
514
Normal
0.3
355
Tumor
0.3
427
Tumor
0.3
113
Tumor
0.3
815
Tumor
0.3
383
Tumor
0.3
642
Normal
0.3
1014
Normal
0.3
368
Normal
0.3
135
Tumor
0.3
451
Tumor
0.3
478
Normal
0.3
171
Tumor
0.3
126
Normal
0.3
424
Normal
0.3
386
Normal
0.3
636
Normal
0.3
984
Normal
0.2
713
Tumor
0.2
284
Normal
0.2
283
Tumor
0.2
145
Tumor
0.2
466
Normal
0.2
786
Normal
0.2
128
Normal
0.2
331
Tumor
0.2
567
Tumor
0.2
777
Tumor
0.2
376
Normal
0.2
277
Tumor
0.2
212
Normal
0.2
213
Tumor
0.2
473
Tumor
0.2
744
Normal
0.2
647
Tumor
0.2
327
Tumor
0.2
955
Tumor
0.2
982
Normal
0.2
314
Normal
0.2
518
Normal
0.2
916
Normal
0.2
563
Tumor
0.2
865
Tumor
0.2
498
Normal
0.2
361
Tumor
0.2
723
Tumor
0.2
866
Normal
0.2
648
Normal
0.2
286
Normal
0.2
923
Tumor
0.2
136
Normal
0.2
132
Normal
0.2
755
Tumor
0.2
224
Normal
0.2
312
Normal
0.2
268
Normal
0.2
278
Normal
0.2
362
Normal
0.2
742
Normal
0.2
211
Tumor
0.2
1032
Normal
0.2
813
Tumor
0.2
228
Normal
0.2
161
Tumor
0.2
467
Tumor
0.2
468
Normal
0.2
516
Normal
0.2
365
Tumor
0.1
172
Normal
0.1
111
Normal
0.1
526
Normal
0.1
641
Tumor
0.1
217
Tumor
0.1
868
Normal
0.1
191
Tumor
0.1
911
Tumor
0.1
423
Tumor
0.1
924
Normal
0.1
958
Normal
0.1
456
Normal
0.1
267
Tumor
0.1
494
Normal
0.1
493
Tumor
0.1
187
Tumor
0.1
938
Normal
0.1
922
Normal
0.1
487
Tumor
0.1
328
Normal
0.1
662
Normal
0.1
1043
Tumor
0.1
926
Normal
0.1
223
Tumor
0.1
917
Tumor
0.1
1046
Normal
0.1
1044
Normal
0.1
925
Tumor
0.1
358
Normal
0.1
462
Normal
0.1
1045
Tumor
0.1
221
Tumor
0.1
1022
Normal
0.1
954
Normal
0.1
412
Normal
0.1
188
Normal
0.1
298
Normal
0.1
356
Normal
0.1
148
Normal
0.1
147
Tumor
0.1
746
Normal
0.1
492
Normal
0.1
477
Tumor
0.1
186
Normal
0.1
142
Normal
0.1
448
Normal
0.1
881
Tumor
0.1
966
Normal
0.1
661
Tumor
0.1
342
Normal
0.1
964
Normal
0.1
915
Tumor
0.1
884
Normal
0.1
867
Tumor
0.1
258
Normal
0.1
218
Normal
0.1
232
Normal
0.1
366
Normal
0.1
1025
Tumor
0.1
538
Normal
0.1
722
Normal
0.1
852
Normal
0.1
756
Normal
0.1
262
Normal
0.1
364
Normal
0.1
124
Normal
0.1
968
Normal
0.1
195
Tumor
0.1
472
Normal
0.1
114
Normal
0.1
137
Tumor
0.0
686
Normal
0.0
421
Tumor
0.0
214
Normal
0.0
728
Normal
0.0
944
Normal
0.0
814
Normal
0.0
222
Normal
0.0
664
Normal
0.0
862
Normal
0.0
824
Normal
0.0
864
Normal
0.0
416
Normal
0.0
816
Normal
0.0
858
Normal
0.0
162
Normal
0.0
1041
Tumor
0.0
618
Normal
0.0
617
Tumor
0.0
311
Tumor
0.0
738
Normal
0.0
465
Tumor
0.0
1021
Tumor
0.0
534
Normal
0.0
672
Normal
0.0
343
Tumor
0.0
344
Normal
0.0
918
Normal
0.0
524
Normal
0.0
384
Normal
0.0
138
Normal
0.0
525
Tumor
0.0
483
Tumor
0.0
141
Tumor
0.0
425
Tumor
0.0
714
Normal
0.0
484
Normal
0.0
666
Normal
0.0
912
Normal
0.0
528
Normal
0.0
628
Normal
0.0
367
Tumor
0.0
353
Tumor
0.0
957
Tumor
0.0
354
Normal
0.0
391
Tumor
0.0
976
Normal
0.0
352
Normal
0.0
778
Normal
0.0
196
Normal
0.0
882
Normal
0.0
146
Normal
0.0
185
Tumor
0.0
272
Normal
0.0
297
Tumor
0.0
921
Tumor
0.0
488
Normal
0.0
874
Normal
-0.1
965
Tumor
-0.1
523
Tumor
-0.1
716
Normal
-0.1
341
Tumor
-0.1
1026
Normal
-0.1
443
Tumor
-0.1
447
Tumor
-0.1
536
Normal
-0.1
952
Normal
-0.1
663
Tumor
-0.1
537
Tumor
-0.1
956
Normal
-0.1
545
Tumor
-0.1
515
Tumor
-0.1
698
Normal
-0.1
533
Tumor
-0.1
951
Tumor
-0.1
474
Normal
-0.1
482
Normal
-0.1
554
Normal
-0.1
963
Tumor
-0.1
696
Normal
-0.1
943
Tumor
-0.1
715
Tumor
-0.1
878
Normal
-0.1
1016
Normal
-0.1
695
Tumor
-0.1
546
Normal
-0.2
471
Tumor
-0.2
535
Tumor
-0.2
818
Normal
-0.2
573
Tumor
-0.2
883
Tumor
-0.2
271
Tumor
-0.2
461
Tumor
-0.2
671
Tumor
-0.2
192
Normal
-0.2
385
Tumor
-0.2
285
Tumor
-0.2
823
Tumor
-0.2
737
Tumor
-0.2
413
Tumor
-0.3
463
Tumor
-0.3
914
Normal
-0.3
553
Tumor
-0.3
1031
Tumor
-0.3
727
Tumor
-0.3
975
Tumor
-0.4
817
Tumor
-0.4
517
Tumor
-0.4
455
Tumor
-0.4
363
Tumor
-0.4
877
Tumor
-0.6
967
Tumor
-0.6
743
Tumor
-0.6
131
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
