MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.7 nTPM
HPA Brain:77.5 nTPM
GTEx:51.7 nTPM
FANTOM5:112.0 Scaled Tags Per Million
Pig:109.9 nTPM
Mouse:78.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.8
2586 Male, age 75, left hemisphere 89.2
2828 Female, age 72, unknown 79.3
1870 Female, age 42, unknown 77.0
2019 Male, age 18, unknown 76.3
2411 Female, age 72, unknown 68.2
1827 Male, age 72, unknown 67.1
2666 Male, age 74, left hemisphere 66.6
1833 Male, age 53, unknown 63.2
1830 Male, age 51, unknown 62.0
2219 Male, age 76, both hemispheres 49.6
Dorsal raphe nucleus
nTPM: 65.8
1828 Male, age 53, unknown 71.1
2298 Female, age 72, unknown 69.1
2016 Female, age 72, unknown 65.8
2750 Male, age 76, both hemispheres 63.1
2047 Male, age 72, unknown 59.9
Inferior colliculus
nTPM: 57.8
1890 Male, age 53, unknown 59.9
1848 Female, age 42, unknown 57.6
2097 Female, age 72, unknown 57.3
2849 Male, age 72, unknown 56.6
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Periaquaductal grey, anterior
nTPM: 63.8
2502 Female, age 75, unknown 70.2
1795 Male, age 51, unknown 63.3
1947 Male, age 18, unknown 57.9
Periaquaductal grey, dorsal
nTPM: 56.0
2850 Male, age 76, both hemispheres 58.2
2464 Female, age 72, unknown 57.2
1831 Male, age 72, unknown 56.0
1840 Male, age 53, unknown 52.5
Periaquaductal grey, lateral
nTPM: 53.8
2140 Male, age 76, both hemispheres 56.9
2053 Male, age 18, unknown 52.5
2272 Male, age 74, both hemispheres 51.9
Pretectal area
nTPM: 60.4
2667 Female, age 75, unknown 76.1
1817 Female, age 42, unknown 67.1
2007 Male, age 72, unknown 64.6
1816 Male, age 51, unknown 63.1
1815 Male, age 53, unknown 62.8
2825 Male, age 18, unknown 58.2
2407 Male, age 75, both hemispheres 57.8
1944 Female, age 72, unknown 55.0
2273 Male, age 74, both hemispheres 54.9
2316 Male, age 76, right hemisphere 54.9
2224 Female, age 72, unknown 49.4
Red nucleus
nTPM: 77.5
2769 Male, age 72, unknown 84.7
1904 Male, age 53, unknown 84.4
2227 Male, age 72, unknown 81.8
1821 Female, age 72, unknown 79.9
2503 Female, age 72, unknown 79.9
1865 Male, age 51, unknown 79.5
2584 Male, age 75, left hemisphere 78.2
2785 Male, age 18, unknown 76.0
2588 Male, age 74, left hemisphere 75.6
1954 Female, age 42, unknown 73.2
2823 Male, age 76, right hemisphere 69.5
2725 Female, age 75, unknown 67.0
Substantia nigra
nTPM: 61.6
2583 Male, age 75, right hemisphere 74.4
1851 Male, age 51, unknown 71.8
1889 Female, age 72, unknown 67.8
1916 Female, age 42, unknown 66.7
2699 Male, age 18, unknown 66.7
1941 Male, age 53, unknown 61.9
2665 Male, age 74, both hemispheres 59.5
2409 Female, age 72, unknown 52.4
2590 Female, age 75, unknown 51.8
2241 Male, age 72, unknown 43.2
Superior colliculus
nTPM: 64.6
1995 Male, age 72, unknown 82.9
1913 Female, age 42, unknown 79.5
2664 Male, age 75, both hemispheres 73.9
2261 Male, age 18, unknown 62.2
2668 Female, age 75, unknown 61.9
1796 Male, age 53, unknown 60.0
2587 Male, age 74, left hemisphere 57.4
2087 Female, age 72, unknown 56.7
1839 Male, age 51, unknown 55.8
1895 Male, age 76, right hemisphere 55.7
Ventral tegmental area
nTPM: 62.3
2223 Female, age 72, unknown 68.2
2410 Female, age 72, unknown 65.7
1942 Male, age 51, unknown 62.5
1915 Female, age 42, unknown 60.4
2021 Male, age 53, unknown 59.1
2218 Male, age 76, both hemispheres 57.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.7
Samples: 139

Max nTPM: 103.2
Min nTPM: 18.7
Std nTPM: 15.4
Median nTPM: 48.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 103.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 98.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 96.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 89.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 86.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 85.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 83.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 75.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.0
FF:10158-103A5 76 years, female 112.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 109.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.2
Samples: 4

Max nTPM: 130.4
Min nTPM: 90.9
Sample A Female 130.4
Sample B Female 90.9
Sample C Male 103.8
Sample D Male 103.7
Midbrain
nTPM: 109.9
Samples: 4

Max nTPM: 162.9
Min nTPM: 80.2
Sample A Female 162.9
Sample B Female 100.1
Sample C Male 96.2
Sample D Male 80.2
Periaqueductal gray
nTPM: 83.9
Samples: 3

Max nTPM: 87.6
Min nTPM: 77.2
Sample B Female 87.6
Sample C Male 86.9
Sample D Male 77.2
Superior colliculi
nTPM: 107.1
Samples: 4

Max nTPM: 121.2
Min nTPM: 99.3
Sample A Female 121.2
Sample B Female 105.4
Sample C Male 99.3
Sample D Male 102.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 78.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.5
Samples: 4

Max nTPM: 87.8
Min nTPM: 72.1
Sample A Male 87.8
Sample B Male 72.1
Sample C Female 72.2
Sample D Female 81.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71486931 Antisense, RP_050913_01_A02, Mouse strain C57BL/6J (56 days, male) 0.2

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