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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM12 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
83.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
68.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.3
965
Tumor
1.2
1013
Tumor
1.1
533
Tumor
1.0
1027
Tumor
1.0
937
Tumor
0.9
525
Tumor
0.9
953
Tumor
0.8
497
Tumor
0.8
367
Tumor
0.8
685
Tumor
0.8
883
Tumor
0.7
567
Tumor
0.7
257
Tumor
0.7
473
Tumor
0.7
537
Tumor
0.6
925
Tumor
0.6
355
Tumor
0.6
663
Tumor
0.6
351
Tumor
0.5
1021
Tumor
0.5
695
Tumor
0.5
743
Tumor
0.5
661
Tumor
0.5
487
Tumor
0.5
817
Tumor
0.5
211
Tumor
0.5
983
Tumor
0.5
865
Tumor
0.5
923
Tumor
0.5
981
Tumor
0.5
861
Tumor
0.5
943
Tumor
0.5
523
Tumor
0.5
137
Tumor
0.5
283
Tumor
0.5
357
Tumor
0.4
535
Tumor
0.4
727
Tumor
0.4
285
Tumor
0.4
851
Tumor
0.4
647
Tumor
0.4
573
Tumor
0.4
1025
Tumor
0.4
777
Tumor
0.4
545
Tumor
0.4
465
Tumor
0.4
311
Tumor
0.3
951
Tumor
0.3
477
Tumor
0.3
411
Tumor
0.3
967
Tumor
0.3
745
Tumor
0.3
815
Tumor
0.3
1015
Tumor
0.3
171
Tumor
0.3
915
Tumor
0.3
491
Tumor
0.3
327
Tumor
0.3
123
Tumor
0.3
161
Tumor
0.3
375
Tumor
0.3
313
Tumor
0.3
451
Tumor
0.3
977
Tumor
0.3
443
Tumor
0.3
527
Tumor
0.3
427
Tumor
0.3
641
Tumor
0.3
665
Tumor
0.3
353
Tumor
0.2
391
Tumor
0.2
515
Tumor
0.2
395
Tumor
0.2
571
Tumor
0.2
913
Tumor
0.2
131
Tumor
0.2
557
Tumor
0.2
877
Tumor
0.2
141
Tumor
0.2
713
Tumor
0.2
517
Tumor
0.2
231
Tumor
0.2
921
Tumor
0.2
1043
Tumor
0.2
867
Tumor
0.2
467
Tumor
0.2
493
Tumor
0.2
513
Tumor
0.2
387
Tumor
0.1
277
Tumor
0.1
724
Normal
0.1
461
Tumor
0.1
341
Tumor
0.1
741
Tumor
0.1
911
Tumor
0.1
361
Tumor
0.1
955
Tumor
0.1
413
Tumor
0.1
227
Tumor
0.1
483
Tumor
0.1
363
Tumor
0.1
697
Tumor
0.1
671
Tumor
0.1
463
Tumor
0.1
435
Tumor
0.1
617
Tumor
0.1
536
Normal
0.1
187
Tumor
0.1
393
Tumor
0.1
715
Tumor
0.1
147
Tumor
0.1
474
Normal
0.1
528
Normal
0.0
455
Tumor
0.0
127
Tumor
0.0
484
Normal
0.0
952
Normal
0.0
755
Tumor
0.0
261
Tumor
0.0
1041
Tumor
0.0
331
Tumor
0.0
284
Normal
0.0
558
Normal
0.0
328
Normal
0.0
922
Normal
0.0
125
Tumor
0.0
365
Tumor
0.0
433
Tumor
0.0
447
Tumor
0.0
823
Tumor
0.0
1016
Normal
0.0
498
Normal
0.0
916
Normal
0.0
563
Tumor
0.0
978
Normal
0.0
873
Tumor
0.0
223
Tumor
0.0
966
Normal
0.0
481
Tumor
0.0
635
Tumor
0.0
944
Normal
0.0
714
Normal
0.0
553
Tumor
0.0
423
Tumor
0.0
864
Normal
0.0
1014
Normal
0.0
716
Normal
0.0
785
Tumor
0.0
492
Normal
0.0
1044
Normal
0.0
737
Tumor
0.0
918
Normal
0.0
615
Tumor
0.0
912
Normal
0.0
113
Tumor
0.0
518
Normal
0.0
696
Normal
0.0
218
Normal
0.0
862
Normal
0.0
297
Tumor
0.0
1028
Normal
0.0
738
Normal
0.0
984
Normal
0.0
471
Tumor
-0.1
385
Tumor
-0.1
954
Normal
-0.1
267
Tumor
-0.1
356
Normal
-0.1
112
Tumor
-0.1
412
Normal
-0.1
917
Tumor
-0.1
415
Tumor
-0.1
195
Tumor
-0.1
728
Normal
-0.1
212
Normal
-0.1
881
Tumor
-0.1
286
Normal
-0.1
1046
Normal
-0.1
494
Normal
-0.1
786
Normal
-0.1
868
Normal
-0.1
554
Normal
-0.1
192
Normal
-0.1
472
Normal
-0.1
421
Tumor
-0.1
312
Normal
-0.1
572
Normal
-0.1
213
Tumor
-0.1
1031
Tumor
-0.1
627
Tumor
-0.1
362
Normal
-0.1
368
Normal
-0.1
425
Tumor
-0.1
448
Normal
-0.1
524
Normal
-0.1
564
Normal
-0.1
721
Tumor
-0.1
863
Tumor
-0.1
642
Normal
-0.1
963
Tumor
-0.1
882
Normal
-0.1
228
Normal
-0.1
616
Normal
-0.1
746
Normal
-0.1
1045
Tumor
-0.1
982
Normal
-0.1
185
Tumor
-0.1
866
Normal
-0.1
478
Normal
-0.1
416
Normal
-0.1
742
Normal
-0.1
221
Tumor
-0.1
874
Normal
-0.1
488
Normal
-0.1
546
Normal
-0.1
217
Tumor
-0.2
938
Normal
-0.2
968
Normal
-0.2
466
Normal
-0.2
191
Tumor
-0.2
464
Normal
-0.2
568
Normal
-0.2
452
Normal
-0.2
618
Normal
-0.2
1026
Normal
-0.2
534
Normal
-0.2
778
Normal
-0.2
214
Normal
-0.2
135
Tumor
-0.2
482
Normal
-0.2
628
Normal
-0.2
196
Normal
-0.2
814
Normal
-0.2
914
Normal
-0.2
744
Normal
-0.2
723
Tumor
-0.2
574
Normal
-0.2
956
Normal
-0.2
172
Normal
-0.2
434
Normal
-0.2
384
Normal
-0.2
926
Normal
-0.2
392
Normal
-0.2
857
Tumor
-0.2
162
Normal
-0.2
224
Normal
-0.2
1042
Normal
-0.2
278
Normal
-0.2
686
Normal
-0.2
722
Normal
-0.2
976
Normal
-0.2
958
Normal
-0.2
186
Normal
-0.2
383
Tumor
-0.2
816
Normal
-0.2
364
Normal
-0.2
232
Normal
-0.2
468
Normal
-0.2
431
Tumor
-0.2
456
Normal
-0.2
222
Normal
-0.2
648
Normal
-0.2
852
Normal
-0.2
376
Normal
-0.2
964
Normal
-0.2
975
Tumor
-0.2
636
Normal
-0.2
664
Normal
-0.2
1032
Normal
-0.2
1022
Normal
-0.2
924
Normal
-0.2
756
Normal
-0.2
878
Normal
-0.2
444
Normal
-0.2
388
Normal
-0.2
258
Normal
-0.3
813
Tumor
-0.3
436
Normal
-0.3
514
Normal
-0.3
343
Tumor
-0.3
148
Normal
-0.3
884
Normal
-0.3
526
Normal
-0.3
824
Normal
-0.3
538
Normal
-0.3
424
Normal
-0.3
516
Normal
-0.3
272
Normal
-0.3
142
Normal
-0.3
422
Normal
-0.3
314
Normal
-0.3
396
Normal
-0.3
262
Normal
-0.3
188
Normal
-0.3
662
Normal
-0.3
298
Normal
-0.3
394
Normal
-0.3
446
Normal
-0.3
268
Normal
-0.3
666
Normal
-0.3
366
Normal
-0.3
462
Normal
-0.3
428
Normal
-0.3
386
Normal
-0.3
114
Normal
-0.3
132
Normal
-0.3
136
Normal
-0.3
432
Normal
-0.4
445
Tumor
-0.4
332
Normal
-0.4
145
Tumor
-0.4
138
Normal
-0.4
128
Normal
-0.4
126
Normal
-0.4
858
Normal
-0.4
352
Normal
-0.4
698
Normal
-0.4
111
Normal
-0.4
124
Normal
-0.4
354
Normal
-0.5
426
Normal
-0.5
271
Tumor
-0.5
414
Normal
-0.5
358
Normal
-0.5
672
Normal
-0.5
818
Normal
-0.5
146
Normal
-0.6
344
Normal
-0.6
342
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
