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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
115.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
102.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
100.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
99.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
96.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
93.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
87.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
87.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
86.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
81.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
80.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
79.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
79.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
78.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
78.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
77.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
76.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
76.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
73.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
72.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
71.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
69.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
65.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
65.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
63.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
63.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
62.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
62.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
60.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
59.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
59.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
59.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
58.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
57.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
56.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
54.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
54.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
54.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
51.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
50.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
48.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
48.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
46.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
43.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
41.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
41.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
38.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
92.5
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
203.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
199.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
193.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
191.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
183.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
178.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
177.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
173.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
169.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
168.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
160.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
159.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
158.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
157.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
156.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
155.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
154.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
152.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
152.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
150.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
150.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
149.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
148.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
145.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
143.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
140.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
140.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
140.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
138.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
135.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
134.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
133.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
133.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
133.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
131.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
130.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
127.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
125.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
123.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
123.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
122.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
120.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
118.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
118.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
117.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
116.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
116.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
114.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
114.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
114.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
114.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
114.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
114.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
114.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
113.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
113.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
113.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
113.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
112.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
111.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
111.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
108.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
107.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
107.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
107.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
107.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
106.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
105.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
105.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
105.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
103.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
103.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
102.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
101.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
101.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
101.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
99.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
98.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
97.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
97.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
96.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
96.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
96.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
95.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
94.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
94.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
94.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
93.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
93.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
93.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
93.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
92.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
92.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
92.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
91.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
91.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
91.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
90.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
90.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
90.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
90.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
90.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
89.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
89.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
89.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
88.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
88.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
87.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
86.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
85.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
85.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
84.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
84.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
84.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
83.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
83.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
83.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
83.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
82.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
81.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
81.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
81.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
81.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
81.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
80.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
80.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
80.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
80.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
78.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
78.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
78.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
78.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
77.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
77.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
77.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
77.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
77.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
77.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
77.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
77.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
76.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
76.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
76.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
76.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
75.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
75.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
75.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
75.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
74.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
73.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
73.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
72.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
72.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
72.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
72.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
71.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
71.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
71.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
71.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
71.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
71.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
71.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
70.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
70.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
69.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
69.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
69.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
68.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
68.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
68.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
68.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
68.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
68.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
67.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
67.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
67.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
67.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
67.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
67.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
67.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
67.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
65.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
65.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
65.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
64.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
64.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
64.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
63.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
63.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
62.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
62.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
62.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
62.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
61.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
61.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
61.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
61.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
61.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
60.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
60.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
57.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
57.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
56.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
56.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
54.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
54.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
53.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
53.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
52.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
50.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
50.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
48.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
47.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
44.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
39.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.6
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.8
331
Tumor
0.7
277
Tumor
0.7
661
Tumor
0.6
131
Tumor
0.6
271
Tumor
0.6
425
Tumor
0.5
351
Tumor
0.5
497
Tumor
0.5
413
Tumor
0.5
641
Tumor
0.5
977
Tumor
0.5
523
Tumor
0.5
965
Tumor
0.4
727
Tumor
0.4
635
Tumor
0.4
443
Tumor
0.4
267
Tumor
0.4
533
Tumor
0.4
881
Tumor
0.4
161
Tumor
0.4
865
Tumor
0.4
313
Tumor
0.4
1013
Tumor
0.4
663
Tumor
0.4
737
Tumor
0.4
545
Tumor
0.4
123
Tumor
0.4
665
Tumor
0.4
385
Tumor
0.4
285
Tumor
0.4
1031
Tumor
0.4
355
Tumor
0.4
1025
Tumor
0.4
367
Tumor
0.3
171
Tumor
0.3
431
Tumor
0.3
921
Tumor
0.3
357
Tumor
0.3
967
Tumor
0.3
951
Tumor
0.3
671
Tumor
0.3
983
Tumor
0.3
917
Tumor
0.3
537
Tumor
0.3
473
Tumor
0.3
393
Tumor
0.3
883
Tumor
0.3
297
Tumor
0.3
341
Tumor
0.3
311
Tumor
0.3
427
Tumor
0.3
647
Tumor
0.3
777
Tumor
0.3
185
Tumor
0.3
724
Normal
0.2
447
Tumor
0.2
463
Tumor
0.2
112
Tumor
0.2
817
Tumor
0.2
937
Tumor
0.2
527
Tumor
0.2
867
Tumor
0.2
923
Tumor
0.2
553
Tumor
0.2
861
Tumor
0.2
467
Tumor
0.2
785
Tumor
0.2
695
Tumor
0.2
135
Tumor
0.2
217
Tumor
0.2
535
Tumor
0.2
877
Tumor
0.2
423
Tumor
0.2
433
Tumor
0.2
231
Tumor
0.2
221
Tumor
0.2
395
Tumor
0.2
517
Tumor
0.2
943
Tumor
0.2
353
Tumor
0.2
383
Tumor
0.2
187
Tumor
0.2
411
Tumor
0.2
1021
Tumor
0.2
481
Tumor
0.2
487
Tumor
0.2
343
Tumor
0.2
391
Tumor
0.2
211
Tumor
0.2
451
Tumor
0.2
268
Normal
0.2
615
Tumor
0.2
1041
Tumor
0.2
975
Tumor
0.1
415
Tumor
0.1
387
Tumor
0.1
715
Tumor
0.1
435
Tumor
0.1
477
Tumor
0.1
394
Normal
0.1
227
Tumor
0.1
363
Tumor
0.1
455
Tumor
0.1
445
Tumor
0.1
627
Tumor
0.1
278
Normal
0.1
375
Tumor
0.1
213
Tumor
0.1
513
Tumor
0.1
386
Normal
0.1
368
Normal
0.1
953
Tumor
0.1
957
Tumor
0.1
873
Tumor
0.1
571
Tumor
0.1
911
Tumor
0.1
1015
Tumor
0.1
525
Tumor
0.1
365
Tumor
0.1
141
Tumor
0.1
332
Normal
0.1
955
Tumor
0.1
146
Normal
0.1
361
Tumor
0.1
145
Tumor
0.1
384
Normal
0.1
617
Tumor
0.1
697
Tumor
0.1
192
Normal
0.1
814
Normal
0.1
515
Tumor
0.1
312
Normal
0.1
444
Normal
0.1
1045
Tumor
0.0
421
Tumor
0.0
388
Normal
0.0
461
Tumor
0.0
563
Tumor
0.0
434
Normal
0.0
162
Normal
0.0
915
Tumor
0.0
567
Tumor
0.0
823
Tumor
0.0
396
Normal
0.0
261
Tumor
0.0
685
Tumor
0.0
925
Tumor
0.0
191
Tumor
0.0
755
Tumor
0.0
314
Normal
0.0
478
Normal
0.0
813
Tumor
0.0
366
Normal
0.0
554
Normal
0.0
138
Normal
0.0
493
Tumor
0.0
628
Normal
0.0
195
Tumor
0.0
536
Normal
0.0
963
Tumor
0.0
148
Normal
0.0
358
Normal
0.0
498
Normal
0.0
1043
Tumor
0.0
913
Tumor
0.0
662
Normal
0.0
538
Normal
0.0
432
Normal
0.0
488
Normal
0.0
147
Tumor
0.0
188
Normal
0.0
981
Tumor
0.0
494
Normal
0.0
534
Normal
0.0
516
Normal
0.0
212
Normal
0.0
664
Normal
0.0
113
Tumor
0.0
142
Normal
0.0
471
Tumor
0.0
954
Normal
0.0
483
Tumor
0.0
484
Normal
0.0
224
Normal
0.0
465
Tumor
0.0
446
Normal
0.0
426
Normal
0.0
524
Normal
0.0
938
Normal
0.0
272
Normal
-0.1
412
Normal
-0.1
492
Normal
-0.1
878
Normal
-0.1
472
Normal
-0.1
666
Normal
-0.1
344
Normal
-0.1
1027
Tumor
-0.1
222
Normal
-0.1
356
Normal
-0.1
125
Tumor
-0.1
648
Normal
-0.1
258
Normal
-0.1
815
Tumor
-0.1
127
Tumor
-0.1
376
Normal
-0.1
618
Normal
-0.1
218
Normal
-0.1
546
Normal
-0.1
882
Normal
-0.1
327
Tumor
-0.1
721
Tumor
-0.1
916
Normal
-0.1
392
Normal
-0.1
428
Normal
-0.1
262
Normal
-0.1
557
Tumor
-0.1
464
Normal
-0.1
918
Normal
-0.1
1032
Normal
-0.1
528
Normal
-0.1
922
Normal
-0.1
874
Normal
-0.1
636
Normal
-0.1
572
Normal
-0.1
328
Normal
-0.1
196
Normal
-0.1
298
Normal
-0.1
741
Tumor
-0.1
778
Normal
-0.1
952
Normal
-0.1
354
Normal
-0.1
436
Normal
-0.1
514
Normal
-0.1
966
Normal
-0.1
714
Normal
-0.1
1014
Normal
-0.1
362
Normal
-0.1
642
Normal
-0.1
186
Normal
-0.1
223
Tumor
-0.1
137
Tumor
-0.1
686
Normal
-0.1
568
Normal
-0.1
672
Normal
-0.1
342
Normal
-0.1
964
Normal
-0.1
352
Normal
-0.1
924
Normal
-0.1
124
Normal
-0.1
573
Tumor
-0.1
744
Normal
-0.2
456
Normal
-0.2
284
Normal
-0.2
422
Normal
-0.2
364
Normal
-0.2
868
Normal
-0.2
944
Normal
-0.2
232
Normal
-0.2
1028
Normal
-0.2
416
Normal
-0.2
228
Normal
-0.2
863
Tumor
-0.2
1042
Normal
-0.2
984
Normal
-0.2
286
Normal
-0.2
958
Normal
-0.2
452
Normal
-0.2
756
Normal
-0.2
172
Normal
-0.2
696
Normal
-0.2
857
Tumor
-0.2
257
Tumor
-0.2
518
Normal
-0.2
574
Normal
-0.2
132
Normal
-0.2
716
Normal
-0.2
912
Normal
-0.2
746
Normal
-0.2
448
Normal
-0.2
283
Tumor
-0.2
1044
Normal
-0.2
786
Normal
-0.2
926
Normal
-0.2
114
Normal
-0.2
214
Normal
-0.2
698
Normal
-0.2
482
Normal
-0.2
866
Normal
-0.2
616
Normal
-0.2
1026
Normal
-0.2
978
Normal
-0.2
526
Normal
-0.2
858
Normal
-0.2
976
Normal
-0.2
968
Normal
-0.2
136
Normal
-0.2
462
Normal
-0.2
558
Normal
-0.2
864
Normal
-0.2
564
Normal
-0.2
468
Normal
-0.2
1046
Normal
-0.2
466
Normal
-0.3
424
Normal
-0.3
738
Normal
-0.3
851
Tumor
-0.3
982
Normal
-0.3
474
Normal
-0.3
491
Tumor
-0.3
126
Normal
-0.3
956
Normal
-0.3
742
Normal
-0.3
414
Normal
-0.3
1022
Normal
-0.3
111
Normal
-0.3
852
Normal
-0.3
723
Tumor
-0.3
713
Tumor
-0.4
862
Normal
-0.4
728
Normal
-0.4
914
Normal
-0.4
824
Normal
-0.4
1016
Normal
-0.4
722
Normal
-0.4
128
Normal
-0.4
818
Normal
-0.4
745
Tumor
-0.5
884
Normal
-0.5
816
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
