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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPSAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
141.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
130.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
122.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
106.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
106.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
105.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
94.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
87.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
86.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
85.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
85.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
85.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
84.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
83.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
80.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
78.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
78.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
78.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
77.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
74.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
74.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
74.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
73.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
72.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
72.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
70.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
69.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
68.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
68.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
68.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
67.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
67.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
65.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
65.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
65.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
65.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
64.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
63.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
63.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
63.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
62.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
62.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
62.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
62.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
61.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
61.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
60.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
60.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
59.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
58.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
54.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
54.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
54.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
53.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
52.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
52.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
52.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
51.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
51.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
51.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
50.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
49.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
49.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
48.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
47.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
46.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
43.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
39.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
39.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
37.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPSAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.4
Number of samples
231
Samples
Sample
Description
TPM
DO48695
0 years, male, NA, stage:2, alive, 720 days
81.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
78.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
72.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
69.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
69.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
68.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
67.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
65.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
64.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
64.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
61.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
60.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
60.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
60.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
60.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
57.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
55.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
55.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
51.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
51.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
50.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
50.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
49.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
49.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
43.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
41.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
392
Normal
1.3
627
Tumor
1.1
777
Tumor
1.1
466
Normal
1.0
443
Tumor
1.0
515
Tumor
0.9
394
Normal
0.9
172
Normal
0.8
1013
Tumor
0.8
423
Tumor
0.7
863
Tumor
0.7
436
Normal
0.6
435
Tumor
0.5
695
Tumor
0.5
922
Normal
0.5
818
Normal
0.5
824
Normal
0.5
862
Normal
0.5
433
Tumor
0.5
141
Tumor
0.5
1026
Normal
0.5
858
Normal
0.4
741
Tumor
0.4
298
Normal
0.4
111
Normal
0.4
482
Normal
0.4
222
Normal
0.4
465
Tumor
0.4
964
Normal
0.4
342
Normal
0.4
714
Normal
0.4
746
Normal
0.4
456
Normal
0.4
196
Normal
0.4
618
Normal
0.4
186
Normal
0.4
313
Tumor
0.4
162
Normal
0.4
742
Normal
0.4
698
Normal
0.4
756
Normal
0.4
432
Normal
0.4
1022
Normal
0.3
414
Normal
0.3
132
Normal
0.3
411
Tumor
0.3
1046
Normal
0.3
128
Normal
0.3
148
Normal
0.3
723
Tumor
0.3
231
Tumor
0.3
472
Normal
0.3
426
Normal
0.3
464
Normal
0.3
424
Normal
0.3
882
Normal
0.3
127
Tumor
0.3
357
Tumor
0.3
663
Tumor
0.3
912
Normal
0.3
938
Normal
0.3
952
Normal
0.3
123
Tumor
0.3
314
Normal
0.3
376
Normal
0.3
484
Normal
0.3
358
Normal
0.3
924
Normal
0.2
685
Tumor
0.2
866
Normal
0.2
571
Tumor
0.2
354
Normal
0.2
114
Normal
0.2
462
Normal
0.2
428
Normal
0.2
412
Normal
0.2
648
Normal
0.2
738
Normal
0.2
364
Normal
0.2
616
Normal
0.2
332
Normal
0.2
534
Normal
0.2
722
Normal
0.2
112
Tumor
0.2
1027
Tumor
0.2
926
Normal
0.2
366
Normal
0.2
628
Normal
0.2
864
Normal
0.2
965
Tumor
0.2
356
Normal
0.2
136
Normal
0.2
546
Normal
0.2
944
Normal
0.2
278
Normal
0.2
146
Normal
0.2
446
Normal
0.2
477
Tumor
0.2
981
Tumor
0.2
728
Normal
0.2
716
Normal
0.2
816
Normal
0.2
361
Tumor
0.2
878
Normal
0.1
664
Normal
0.1
1016
Normal
0.1
533
Tumor
0.1
312
Normal
0.1
388
Normal
0.1
528
Normal
0.1
953
Tumor
0.1
642
Normal
0.1
666
Normal
0.1
884
Normal
0.1
635
Tumor
0.1
786
Normal
0.1
258
Normal
0.1
696
Normal
0.1
1032
Normal
0.1
636
Normal
0.1
328
Normal
0.1
286
Normal
0.1
416
Normal
0.1
488
Normal
0.1
778
Normal
0.1
744
Normal
0.1
422
Normal
0.1
228
Normal
0.1
568
Normal
0.1
218
Normal
0.1
857
Tumor
0.1
341
Tumor
0.1
745
Tumor
0.1
868
Normal
0.1
147
Tumor
0.1
277
Tumor
0.1
914
Normal
0.1
272
Normal
0.1
131
Tumor
0.1
445
Tumor
0.1
448
Normal
0.1
966
Normal
0.1
1044
Normal
0.1
514
Normal
0.1
958
Normal
0.1
142
Normal
0.1
982
Normal
0.1
1014
Normal
0.0
647
Tumor
0.0
355
Tumor
0.0
518
Normal
0.0
352
Normal
0.0
124
Normal
0.0
978
Normal
0.0
386
Normal
0.0
867
Tumor
0.0
874
Normal
0.0
481
Tumor
0.0
214
Normal
0.0
976
Normal
0.0
171
Tumor
0.0
396
Normal
0.0
956
Normal
0.0
554
Normal
0.0
232
Normal
0.0
375
Tumor
0.0
138
Normal
0.0
463
Tumor
0.0
221
Tumor
0.0
368
Normal
0.0
262
Normal
0.0
344
Normal
0.0
1042
Normal
0.0
977
Tumor
0.0
434
Normal
0.0
572
Normal
0.0
362
Normal
0.0
185
Tumor
-0.1
873
Tumor
-0.1
957
Tumor
-0.1
918
Normal
-0.1
1043
Tumor
-0.1
126
Normal
-0.1
955
Tumor
-0.1
474
Normal
-0.1
351
Tumor
-0.1
452
Normal
-0.1
327
Tumor
-0.1
813
Tumor
-0.1
686
Normal
-0.1
814
Normal
-0.1
662
Normal
-0.1
883
Tumor
-0.1
494
Normal
-0.1
516
Normal
-0.1
615
Tumor
-0.1
715
Tumor
-0.1
161
Tumor
-0.1
968
Normal
-0.1
1021
Tumor
-0.1
284
Normal
-0.1
523
Tumor
-0.1
461
Tumor
-0.1
431
Tumor
-0.1
564
Normal
-0.1
513
Tumor
-0.1
923
Tumor
-0.1
125
Tumor
-0.1
212
Normal
-0.1
468
Normal
-0.1
217
Tumor
-0.1
755
Tumor
-0.1
271
Tumor
-0.2
573
Tumor
-0.2
384
Normal
-0.2
365
Tumor
-0.2
954
Normal
-0.2
861
Tumor
-0.2
526
Normal
-0.2
192
Normal
-0.2
984
Normal
-0.2
188
Normal
-0.2
137
Tumor
-0.2
617
Tumor
-0.2
737
Tumor
-0.2
574
Normal
-0.2
852
Normal
-0.2
353
Tumor
-0.2
563
Tumor
-0.2
558
Normal
-0.2
525
Tumor
-0.2
267
Tumor
-0.2
785
Tumor
-0.2
113
Tumor
-0.3
557
Tumor
-0.3
257
Tumor
-0.3
261
Tumor
-0.3
641
Tumor
-0.3
444
Normal
-0.3
224
Normal
-0.3
391
Tumor
-0.3
268
Normal
-0.3
487
Tumor
-0.3
672
Normal
-0.3
1028
Normal
-0.3
195
Tumor
-0.3
297
Tumor
-0.3
478
Normal
-0.3
421
Tumor
-0.3
913
Tumor
-0.3
925
Tumor
-0.3
915
Tumor
-0.3
865
Tumor
-0.3
916
Normal
-0.3
724
Normal
-0.3
567
Tumor
-0.3
415
Tumor
-0.3
213
Tumor
-0.3
527
Tumor
-0.3
491
Tumor
-0.3
911
Tumor
-0.3
493
Tumor
-0.4
497
Tumor
-0.4
537
Tumor
-0.4
393
Tumor
-0.4
815
Tumor
-0.4
455
Tumor
-0.4
285
Tumor
-0.4
671
Tumor
-0.4
1015
Tumor
-0.4
498
Normal
-0.4
451
Tumor
-0.4
665
Tumor
-0.4
343
Tumor
-0.5
467
Tumor
-0.5
473
Tumor
-0.5
881
Tumor
-0.5
1045
Tumor
-0.5
211
Tumor
-0.5
331
Tumor
-0.5
721
Tumor
-0.5
492
Normal
-0.5
311
Tumor
-0.5
538
Normal
-0.5
471
Tumor
-0.5
727
Tumor
-0.5
427
Tumor
-0.5
524
Normal
-0.6
227
Tumor
-0.6
387
Tumor
-0.6
921
Tumor
-0.6
363
Tumor
-0.6
145
Tumor
-0.6
963
Tumor
-0.6
1031
Tumor
-0.6
937
Tumor
-0.6
483
Tumor
-0.6
425
Tumor
-0.6
823
Tumor
-0.6
545
Tumor
-0.6
447
Tumor
-0.6
187
Tumor
-0.6
383
Tumor
-0.7
661
Tumor
-0.7
951
Tumor
-0.7
851
Tumor
-0.7
877
Tumor
-0.7
553
Tumor
-0.7
975
Tumor
-0.7
983
Tumor
-0.7
536
Normal
-0.7
413
Tumor
-0.8
367
Tumor
-0.8
1041
Tumor
-0.8
517
Tumor
-0.8
223
Tumor
-0.8
697
Tumor
-0.8
191
Tumor
-0.8
943
Tumor
-0.8
713
Tumor
-0.8
1025
Tumor
-0.8
917
Tumor
-0.8
283
Tumor
-0.9
135
Tumor
-0.9
743
Tumor
-0.9
817
Tumor
-1.0
385
Tumor
-1.1
395
Tumor
-1.1
967
Tumor
-1.1
535
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.