BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:7.1 nTPM
HPA Brain:58.3 nTPM
GTEx:7.1 nTPM
FANTOM5:11.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:4.8 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA046800
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 58.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.6
1781 Male, age 74, unknown 47.6
2288 Male, age 75, left hemisphere 45.1
2290 Female, age 72, unknown 43.9
2289 Male, age 61, right hemisphere 42.5
2846 Female, age 79, unknown 37.7
1857 Female, age 85, left hemisphere 37.2
2481 Female, age 94, left hemisphere 36.2
1854 Male, age 80, left hemisphere 34.5
Globus pallidus, externus
nTPM: 44.0
2567 Female, age 72, unknown 56.3
2646 Male, age 61, right hemisphere 52.7
2395 Male, age 75, both hemispheres 37.5
2772 Female, age 79, unknown 37.5
1996 Male, age 80, right hemisphere 36.1
Globus pallidus, internus
nTPM: 42.5
2566 Female, age 72, unknown 48.3
2483 Female, age 94, right hemisphere 46.0
2111 Female, age 85, right hemisphere 45.7
2287 Male, age 75, right hemisphere 43.0
1818 Male, age 74, unknown 39.2
2037 Male, age 80, right hemisphere 38.7
2778 Female, age 91, both hemispheres 36.5
Nucleus accumbens
nTPM: 37.9
2286 Male, age 75, left hemisphere 47.3
2732 Male, age 80, right hemisphere 42.7
1783 Male, age 74, unknown 41.6
1806 Female, age 85, left hemisphere 37.0
2391 Female, age 94, left hemisphere 36.9
2824 Male, age 61, right hemisphere 33.7
2698 Female, age 72, unknown 32.2
1856 Female, age 91, right hemisphere 31.7
Nucleus basalis of Meynert
nTPM: 41.7
2569 Male, age 61, both hemispheres 49.2
2821 Male, age 75, both hemispheres 41.2
2393 Male, age 80, right hemisphere 39.6
2484 Female, age 94, left hemisphere 36.9
Nucleus of the diagonal band
nTPM: 58.3
2195 Female, age 85, both hemispheres 69.9
2775 Male, age 80, right hemisphere 61.2
2029 Male, age 61, right hemisphere 57.3
1979 Male, age 74, unknown 51.7
1812 Female, age 91, both hemispheres 51.3
Putamen
nTPM: 39.0
2489 Female, age 72, unknown 44.9
2647 Male, age 75, left hemisphere 41.9
1829 Male, age 74, unknown 39.9
2466 Female, age 79, unknown 37.8
1838 Male, age 80, right hemisphere 36.4
1937 Female, age 91, right hemisphere 36.3
2482 Female, age 94, left hemisphere 36.0
Septal nuclei
nTPM: 57.5
1960 Male, age 74, unknown 75.6
2059 Female, age 85, both hemispheres 61.6
2009 Female, age 91, both hemispheres 59.4
2031 Female, age 72, unknown 57.6
2629 Female, age 94, right hemisphere 52.5
2199 Male, age 80, right hemisphere 52.2
2394 Male, age 61, left hemisphere 43.5
Stria terminalis, bed nucleus
nTPM: 53.5
1974 Female, age 91, both hemispheres 54.5
2486 Female, age 94, both hemispheres 54.5
2201 Male, age 74, unknown 51.6

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 7.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.1
Samples: 246

Max nTPM: 20.7
Min nTPM: 2.9
Std nTPM: 1.8
Median nTPM: 7.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 20.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 13.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 12.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 12.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 11.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 11.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 10.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 10.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 10.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 10.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 10.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 14.8
Min nTPM: 2.2
Std nTPM: 1.9
Median nTPM: 6.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 14.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 13.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 12.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 11.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 11.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 11.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 11.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 10.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 10.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 10.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 10.2
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Brain - Putamen (basal ganglia)
Average nTPM: 6.4
Samples: 205

Max nTPM: 13.9
Min nTPM: 3.0
Std nTPM: 1.6
Median nTPM: 6.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 13.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 11.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 10.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 10.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 9.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 9.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 9.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 9.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 9.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 9.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 9.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.7
FF:10164-103B2 76 years, female 9.7
Nucleus accumbens
Scaled Tags Per Million: 11.5
FF:10037-101F1 23-56 years, mixed 11.5
Putamen
Scaled Tags Per Million: 5.4
FF:10176-103C5 60 years, female 5.4
Globus pallidus
Scaled Tags Per Million: 5.0
FF:10161-103A8 76 years, female 6.1
FF:10175-103C4 60 years, female 3.9

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 4.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.5
Sample A Male 4.2
Sample B Male 4.1
Sample C Female 5.3
Sample D Female 3.5
Septum
nTPM: 2.9
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.7
Sample A Male 2.6
Sample B Male 1.7
Sample C Female 3.6
Sample D Female 3.8
Ventral forebrain
nTPM: 4.8
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.7
Sample A Male 5.8
Sample B Male 3.7
Sample C Female 4.3
Sample D Female 5.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69672330 Antisense, RP_050428_03_E09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69672330 Antisense, RP_050428_03_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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