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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
85.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
75.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
68.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
63.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
60.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
59.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
52.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
51.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
50.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
49.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
47.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
46.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
46.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
43.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
40.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
40.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
40.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
39.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
39.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
36.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
30.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
395
Tumor
2.2
983
Tumor
1.8
428
Normal
1.2
426
Normal
1.1
414
Normal
1.1
421
Tumor
1.0
424
Normal
0.9
422
Normal
0.9
413
Tumor
0.8
964
Normal
0.7
823
Tumor
0.7
451
Tumor
0.7
311
Tumor
0.6
557
Tumor
0.6
423
Tumor
0.6
697
Tumor
0.6
297
Tumor
0.6
385
Tumor
0.6
363
Tumor
0.5
713
Tumor
0.5
432
Normal
0.5
473
Tumor
0.5
425
Tumor
0.5
444
Normal
0.5
482
Normal
0.5
213
Tumor
0.4
145
Tumor
0.4
954
Normal
0.4
524
Normal
0.4
464
Normal
0.4
478
Normal
0.4
142
Normal
0.4
393
Tumor
0.4
914
Normal
0.4
938
Normal
0.4
978
Normal
0.4
217
Tumor
0.4
868
Normal
0.4
436
Normal
0.4
427
Tumor
0.4
434
Normal
0.4
824
Normal
0.4
446
Normal
0.4
298
Normal
0.3
228
Normal
0.3
912
Normal
0.3
312
Normal
0.3
534
Normal
0.3
554
Normal
0.3
467
Tumor
0.3
513
Tumor
0.3
462
Normal
0.3
285
Tumor
0.3
516
Normal
0.3
573
Tumor
0.3
526
Normal
0.3
278
Normal
0.3
277
Tumor
0.3
466
Normal
0.3
224
Normal
0.2
952
Normal
0.2
455
Tumor
0.2
943
Tumor
0.2
286
Normal
0.2
195
Tumor
0.2
396
Normal
0.2
817
Tumor
0.2
192
Normal
0.2
816
Normal
0.2
858
Normal
0.2
538
Normal
0.2
461
Tumor
0.2
331
Tumor
0.2
536
Normal
0.2
472
Normal
0.2
911
Tumor
0.2
284
Normal
0.2
956
Normal
0.2
362
Normal
0.2
571
Tumor
0.2
261
Tumor
0.2
481
Tumor
0.2
227
Tumor
0.2
283
Tumor
0.2
366
Normal
0.2
221
Tumor
0.2
976
Normal
0.1
268
Normal
0.1
851
Tumor
0.1
262
Normal
0.1
443
Tumor
0.1
963
Tumor
0.1
471
Tumor
0.1
222
Normal
0.1
857
Tumor
0.1
528
Normal
0.1
328
Normal
0.1
355
Tumor
0.1
958
Normal
0.1
474
Normal
0.1
384
Normal
0.1
852
Normal
0.1
218
Normal
0.1
211
Tumor
0.1
944
Normal
0.1
514
Normal
0.1
535
Tumor
0.1
861
Tumor
0.1
686
Normal
0.1
368
Normal
0.0
882
Normal
0.0
937
Tumor
0.0
445
Tumor
0.0
456
Normal
0.0
525
Tumor
0.0
223
Tumor
0.0
147
Tumor
0.0
864
Normal
0.0
567
Tumor
0.0
392
Normal
0.0
1014
Normal
0.0
365
Tumor
0.0
884
Normal
0.0
463
Tumor
0.0
696
Normal
0.0
721
Tumor
0.0
572
Normal
0.0
866
Normal
0.0
327
Tumor
0.0
568
Normal
0.0
272
Normal
0.0
518
Normal
0.0
546
Normal
0.0
212
Normal
0.0
375
Tumor
0.0
131
Tumor
0.0
716
Normal
0.0
431
Tumor
0.0
313
Tumor
0.0
527
Tumor
0.0
965
Tumor
0.0
267
Tumor
0.0
1045
Tumor
0.0
966
Normal
0.0
878
Normal
0.0
447
Tumor
-0.1
214
Normal
-0.1
862
Normal
-0.1
386
Normal
-0.1
332
Normal
-0.1
563
Tumor
-0.1
433
Tumor
-0.1
515
Tumor
-0.1
191
Tumor
-0.1
415
Tumor
-0.1
271
Tumor
-0.1
1046
Normal
-0.1
982
Normal
-0.1
815
Tumor
-0.1
162
Normal
-0.1
136
Normal
-0.1
135
Tumor
-0.1
412
Normal
-0.2
867
Tumor
-0.2
574
Normal
-0.2
874
Normal
-0.2
416
Normal
-0.2
376
Normal
-0.2
141
Tumor
-0.2
387
Tumor
-0.2
698
Normal
-0.2
957
Tumor
-0.2
364
Normal
-0.2
448
Normal
-0.2
146
Normal
-0.2
185
Tumor
-0.2
533
Tumor
-0.2
188
Normal
-0.2
314
Normal
-0.2
232
Normal
-0.2
564
Normal
-0.2
411
Tumor
-0.2
394
Normal
-0.3
967
Tumor
-0.3
553
Tumor
-0.3
196
Normal
-0.3
468
Normal
-0.3
1043
Tumor
-0.3
137
Tumor
-0.3
477
Tumor
-0.3
883
Tumor
-0.3
361
Tumor
-0.3
391
Tumor
-0.3
968
Normal
-0.3
863
Tumor
-0.3
545
Tumor
-0.3
722
Normal
-0.3
383
Tumor
-0.3
558
Normal
-0.3
172
Normal
-0.3
818
Normal
-0.3
877
Tumor
-0.3
356
Normal
-0.3
258
Normal
-0.3
452
Normal
-0.3
951
Tumor
-0.3
1016
Normal
-0.3
186
Normal
-0.4
715
Tumor
-0.4
388
Normal
-0.4
523
Tumor
-0.4
955
Tumor
-0.4
984
Normal
-0.4
714
Normal
-0.4
435
Tumor
-0.4
187
Tumor
-0.4
148
Normal
-0.4
913
Tumor
-0.4
881
Tumor
-0.4
873
Tumor
-0.4
132
Normal
-0.4
1044
Normal
-0.5
517
Tumor
-0.5
537
Tumor
-0.5
465
Tumor
-0.5
953
Tumor
-0.5
367
Tumor
-0.5
977
Tumor
-0.5
1015
Tumor
-0.5
161
Tumor
-0.6
981
Tumor
-0.6
138
Normal
-0.7
685
Tumor
-0.8
257
Tumor
-0.8
865
Tumor
-0.9
171
Tumor
-0.9
975
Tumor
-1.0
1013
Tumor
-1.2
695
Tumor
-1.2
231
Tumor
-1.2
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
615
Tumor
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.