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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TONSL is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TONSL is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.7
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
3.7
815
Tumor
2.8
328
Normal
2.1
391
Tumor
1.9
884
Normal
1.9
818
Normal
1.8
186
Normal
1.7
192
Normal
1.6
517
Tumor
1.5
713
Tumor
1.5
368
Normal
1.4
663
Tumor
1.4
627
Tumor
1.4
472
Normal
1.3
671
Tumor
1.3
722
Normal
1.2
965
Tumor
1.2
816
Normal
1.1
953
Tumor
1.1
217
Tumor
1.1
951
Tumor
1.1
546
Normal
1.1
617
Tumor
1.1
616
Normal
1.1
262
Normal
1.0
364
Normal
1.0
863
Tumor
1.0
351
Tumor
1.0
574
Normal
0.9
1028
Normal
0.9
967
Tumor
0.9
272
Normal
0.9
615
Tumor
0.9
628
Normal
0.8
464
Normal
0.8
277
Tumor
0.8
224
Normal
0.8
388
Normal
0.8
534
Normal
0.8
665
Tumor
0.7
686
Normal
0.7
386
Normal
0.7
618
Normal
0.7
1046
Normal
0.7
396
Normal
0.7
912
Normal
0.7
823
Tumor
0.7
416
Normal
0.7
456
Normal
0.6
697
Tumor
0.6
865
Tumor
0.6
536
Normal
0.6
413
Tumor
0.6
228
Normal
0.6
1045
Tumor
0.6
478
Normal
0.6
756
Normal
0.6
258
Normal
0.5
882
Normal
0.5
285
Tumor
0.5
523
Tumor
0.5
232
Normal
0.5
498
Normal
0.5
497
Tumor
0.5
661
Tumor
0.5
343
Tumor
0.5
367
Tumor
0.5
642
Normal
0.5
331
Tumor
0.5
528
Normal
0.5
824
Normal
0.4
983
Tumor
0.4
313
Tumor
0.4
327
Tumor
0.4
188
Normal
0.4
1032
Normal
0.4
923
Tumor
0.4
851
Tumor
0.4
132
Normal
0.4
538
Normal
0.4
311
Tumor
0.4
814
Normal
0.4
357
Tumor
0.4
358
Normal
0.4
1044
Normal
0.4
746
Normal
0.4
366
Normal
0.4
964
Normal
0.4
354
Normal
0.3
482
Normal
0.3
568
Normal
0.3
491
Tumor
0.3
353
Tumor
0.3
213
Tumor
0.3
394
Normal
0.3
452
Normal
0.3
873
Tumor
0.3
126
Normal
0.3
462
Normal
0.3
283
Tumor
0.3
852
Normal
0.3
341
Tumor
0.3
412
Normal
0.3
113
Tumor
0.3
427
Tumor
0.3
148
Normal
0.3
422
Normal
0.2
392
Normal
0.2
142
Normal
0.2
448
Normal
0.2
1013
Tumor
0.2
468
Normal
0.2
743
Tumor
0.2
724
Normal
0.2
564
Normal
0.2
666
Normal
0.2
214
Normal
0.2
481
Tumor
0.2
488
Normal
0.2
111
Normal
0.2
487
Tumor
0.2
514
Normal
0.2
428
Normal
0.2
857
Tumor
0.2
425
Tumor
0.2
558
Normal
0.1
926
Normal
0.1
196
Normal
0.1
474
Normal
0.1
312
Normal
0.1
446
Normal
0.1
957
Tumor
0.1
125
Tumor
0.1
1022
Normal
0.1
222
Normal
0.1
314
Normal
0.1
432
Normal
0.1
1042
Normal
0.1
162
Normal
0.1
1027
Tumor
0.1
494
Normal
0.1
352
Normal
0.1
648
Normal
0.1
526
Normal
0.1
785
Tumor
0.1
786
Normal
0.1
968
Normal
0.1
778
Normal
0.1
553
Tumor
0.1
342
Normal
0.1
136
Normal
0.1
963
Tumor
0.1
524
Normal
0.1
723
Tumor
0.0
741
Tumor
0.0
356
Normal
0.0
365
Tumor
0.0
384
Normal
0.0
737
Tumor
0.0
918
Normal
0.0
921
Tumor
0.0
518
Normal
0.0
387
Tumor
0.0
414
Normal
0.0
943
Tumor
0.0
146
Normal
0.0
966
Normal
0.0
332
Normal
0.0
447
Tumor
0.0
916
Normal
0.0
463
Tumor
0.0
672
Normal
0.0
924
Normal
0.0
483
Tumor
0.0
922
Normal
0.0
698
Normal
0.0
685
Tumor
0.0
172
Normal
0.0
138
Normal
0.0
956
Normal
0.0
525
Tumor
0.0
917
Tumor
0.0
662
Normal
-0.1
647
Tumor
-0.1
867
Tumor
-0.1
858
Normal
-0.1
426
Normal
-0.1
112
Tumor
-0.1
716
Normal
-0.1
298
Normal
-0.1
868
Normal
-0.1
938
Normal
-0.1
218
Normal
-0.1
114
Normal
-0.1
861
Tumor
-0.1
958
Normal
-0.1
268
Normal
-0.1
361
Tumor
-0.1
976
Normal
-0.1
493
Tumor
-0.1
535
Tumor
-0.1
744
Normal
-0.1
527
Tumor
-0.1
813
Tumor
-0.1
415
Tumor
-0.1
191
Tumor
-0.1
977
Tumor
-0.1
423
Tumor
-0.1
124
Normal
-0.2
278
Normal
-0.2
424
Normal
-0.2
1043
Tumor
-0.2
297
Tumor
-0.2
344
Normal
-0.2
212
Normal
-0.2
484
Normal
-0.2
742
Normal
-0.2
516
Normal
-0.2
954
Normal
-0.2
211
Tumor
-0.2
573
Tumor
-0.2
362
Normal
-0.2
376
Normal
-0.2
696
Normal
-0.2
874
Normal
-0.2
975
Tumor
-0.2
955
Tumor
-0.2
572
Normal
-0.3
944
Normal
-0.3
271
Tumor
-0.3
1016
Normal
-0.3
777
Tumor
-0.3
383
Tumor
-0.3
721
Tumor
-0.3
862
Normal
-0.3
984
Normal
-0.3
914
Normal
-0.3
195
Tumor
-0.3
915
Tumor
-0.3
911
Tumor
-0.3
513
Tumor
-0.3
728
Normal
-0.3
261
Tumor
-0.3
866
Normal
-0.3
393
Tumor
-0.3
1026
Normal
-0.3
738
Normal
-0.3
978
Normal
-0.3
1015
Tumor
-0.3
466
Normal
-0.4
267
Tumor
-0.4
492
Normal
-0.4
221
Tumor
-0.4
515
Tumor
-0.4
465
Tumor
-0.4
286
Normal
-0.4
982
Normal
-0.4
123
Tumor
-0.4
284
Normal
-0.4
937
Tumor
-0.4
913
Tumor
-0.4
395
Tumor
-0.4
227
Tumor
-0.4
745
Tumor
-0.4
952
Normal
-0.4
223
Tumor
-0.5
664
Normal
-0.5
1014
Normal
-0.5
571
Tumor
-0.5
563
Tumor
-0.5
434
Normal
-0.5
636
Normal
-0.5
727
Tumor
-0.5
433
Tumor
-0.5
131
Tumor
-0.5
925
Tumor
-0.5
864
Normal
-0.5
817
Tumor
-0.5
878
Normal
-0.5
436
Normal
-0.6
451
Tumor
-0.6
554
Normal
-0.6
128
Normal
-0.6
1041
Tumor
-0.6
145
Tumor
-0.6
385
Tumor
-0.7
137
Tumor
-0.7
445
Tumor
-0.7
421
Tumor
-0.7
135
Tumor
-0.7
567
Tumor
-0.7
467
Tumor
-0.7
455
Tumor
-0.8
141
Tumor
-0.8
185
Tumor
-0.8
431
Tumor
-0.8
714
Normal
-0.8
363
Tumor
-0.8
981
Tumor
-0.9
127
Tumor
-0.9
545
Tumor
-0.9
231
Tumor
-1.0
1031
Tumor
-1.0
755
Tumor
-1.0
444
Normal
-1.0
1021
Tumor
-1.0
635
Tumor
-1.1
883
Tumor
-1.1
557
Tumor
-1.1
171
Tumor
-1.1
147
Tumor
-1.1
187
Tumor
-1.1
443
Tumor
-1.2
1025
Tumor
-1.2
375
Tumor
-1.2
533
Tumor
-1.2
461
Tumor
-1.3
715
Tumor
-1.3
537
Tumor
-1.3
435
Tumor
-1.4
411
Tumor
-1.5
161
Tumor
-1.6
355
Tumor
-1.7
473
Tumor
-1.9
695
Tumor
-2.0
641
Tumor
-2.0
881
Tumor
-2.1
257
Tumor
-2.2
471
Tumor
-2.2
477
Tumor
-2.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
