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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS28 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
128.5
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
630.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
591.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
495.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
473.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
357.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
348.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
324.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
285.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
281.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
275.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
267.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
265.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
260.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
249.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
248.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
244.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
243.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
240.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
232.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
229.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
226.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
224.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
223.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
215.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
212.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
208.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
208.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
208.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
196.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
196.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
193.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
189.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
188.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
187.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
186.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
186.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
185.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
184.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
182.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
178.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
178.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
178.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
177.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
175.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
174.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
173.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
172.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
169.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
168.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
167.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
166.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
166.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
165.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
165.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
163.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
162.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
157.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
155.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
152.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
150.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
150.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
148.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
147.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
147.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
146.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
145.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
144.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
141.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
138.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
137.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
136.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
136.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
135.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
135.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
135.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
135.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
135.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
134.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
134.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
133.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
132.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
131.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
131.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
131.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
130.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
130.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
129.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
128.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
127.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
127.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
126.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
125.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
125.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
125.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
124.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
123.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
122.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
121.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
121.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
121.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
121.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
120.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
120.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
119.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
118.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
116.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
115.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
115.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
115.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
114.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
113.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
112.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
112.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
112.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
111.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
111.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
111.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
110.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
109.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
109.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
108.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
106.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
106.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
106.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
102.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
102.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
100.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
100.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
99.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
99.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
99.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
98.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
97.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
97.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
97.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
97.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
95.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
95.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
93.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
92.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
92.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
92.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
92.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
92.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
92.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
91.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
91.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
90.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
89.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
88.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
88.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
87.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
86.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
86.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
85.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
85.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
84.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
84.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
83.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
81.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
81.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
81.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
80.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
79.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
79.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
79.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
79.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
79.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
78.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
78.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
78.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
75.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
75.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
74.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
74.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
73.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
73.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
73.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
73.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
72.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
71.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
71.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
70.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
69.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
69.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
67.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
65.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
64.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
64.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
64.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
63.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
62.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
62.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
61.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
61.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
61.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
60.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
60.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
55.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
55.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
55.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
52.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
49.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
47.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
45.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
43.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.7
427
Tumor
0.6
147
Tumor
0.6
533
Tumor
0.6
865
Tumor
0.5
537
Tumor
0.5
1027
Tumor
0.5
395
Tumor
0.5
641
Tumor
0.5
113
Tumor
0.4
123
Tumor
0.4
743
Tumor
0.4
815
Tumor
0.4
697
Tumor
0.3
745
Tumor
0.3
957
Tumor
0.3
557
Tumor
0.3
385
Tumor
0.3
937
Tumor
0.3
257
Tumor
0.3
1031
Tumor
0.3
311
Tumor
0.3
873
Tumor
0.3
851
Tumor
0.3
817
Tumor
0.3
881
Tumor
0.3
283
Tumor
0.3
663
Tumor
0.2
536
Normal
0.2
1013
Tumor
0.2
1043
Tumor
0.2
517
Tumor
0.2
285
Tumor
0.2
463
Tumor
0.2
493
Tumor
0.2
483
Tumor
0.2
1025
Tumor
0.2
185
Tumor
0.2
227
Tumor
0.2
297
Tumor
0.2
343
Tumor
0.2
951
Tumor
0.2
1021
Tumor
0.2
917
Tumor
0.2
363
Tumor
0.2
635
Tumor
0.2
823
Tumor
0.2
447
Tumor
0.2
448
Normal
0.2
487
Tumor
0.2
145
Tumor
0.2
617
Tumor
0.2
375
Tumor
0.2
965
Tumor
0.2
435
Tumor
0.2
877
Tumor
0.1
367
Tumor
0.1
545
Tumor
0.1
661
Tumor
0.1
925
Tumor
0.1
573
Tumor
0.1
267
Tumor
0.1
461
Tumor
0.1
525
Tumor
0.1
141
Tumor
0.1
125
Tumor
0.1
513
Tumor
0.1
393
Tumor
0.1
171
Tumor
0.1
492
Normal
0.1
331
Tumor
0.1
813
Tumor
0.1
535
Tumor
0.1
471
Tumor
0.1
223
Tumor
0.1
222
Normal
0.1
671
Tumor
0.1
271
Tumor
0.1
913
Tumor
0.1
211
Tumor
0.1
192
Normal
0.1
231
Tumor
0.1
126
Normal
0.1
956
Normal
0.1
191
Tumor
0.1
213
Tumor
0.1
353
Tumor
0.1
161
Tumor
0.1
413
Tumor
0.1
515
Tumor
0.1
964
Normal
0.1
1045
Tumor
0.1
966
Normal
0.1
221
Tumor
0.1
187
Tumor
0.1
627
Tumor
0.1
921
Tumor
0.1
467
Tumor
0.1
444
Normal
0.1
553
Tumor
0.1
975
Tumor
0.1
958
Normal
0.1
451
Tumor
0.1
963
Tumor
0.1
538
Normal
0.1
715
Tumor
0.1
327
Tumor
0.1
943
Tumor
0.0
364
Normal
0.0
497
Tumor
0.0
1044
Normal
0.0
1026
Normal
0.0
685
Tumor
0.0
455
Tumor
0.0
1041
Tumor
0.0
737
Tumor
0.0
411
Tumor
0.0
534
Normal
0.0
852
Normal
0.0
277
Tumor
0.0
217
Tumor
0.0
857
Tumor
0.0
698
Normal
0.0
953
Tumor
0.0
195
Tumor
0.0
224
Normal
0.0
478
Normal
0.0
976
Normal
0.0
111
Normal
0.0
491
Tumor
0.0
473
Tumor
0.0
415
Tumor
0.0
952
Normal
0.0
434
Normal
0.0
428
Normal
0.0
436
Normal
0.0
546
Normal
0.0
861
Tumor
0.0
912
Normal
0.0
874
Normal
0.0
916
Normal
0.0
526
Normal
0.0
915
Tumor
0.0
466
Normal
0.0
518
Normal
0.0
142
Normal
0.0
484
Normal
0.0
878
Normal
0.0
112
Tumor
0.0
498
Normal
0.0
727
Tumor
0.0
214
Normal
0.0
755
Tumor
0.0
977
Tumor
0.0
146
Normal
0.0
356
Normal
0.0
1046
Normal
0.0
528
Normal
0.0
938
Normal
0.0
814
Normal
0.0
137
Tumor
0.0
924
Normal
0.0
474
Normal
0.0
416
Normal
0.0
664
Normal
0.0
648
Normal
0.0
424
Normal
0.0
188
Normal
0.0
422
Normal
0.0
816
Normal
0.0
446
Normal
0.0
1015
Tumor
0.0
713
Tumor
-0.1
212
Normal
-0.1
722
Normal
-0.1
714
Normal
-0.1
341
Tumor
-0.1
563
Tumor
-0.1
186
Normal
-0.1
824
Normal
-0.1
431
Tumor
-0.1
883
Tumor
-0.1
196
Normal
-0.1
746
Normal
-0.1
443
Tumor
-0.1
554
Normal
-0.1
968
Normal
-0.1
756
Normal
-0.1
967
Tumor
-0.1
482
Normal
-0.1
351
Tumor
-0.1
421
Tumor
-0.1
465
Tumor
-0.1
672
Normal
-0.1
127
Tumor
-0.1
777
Tumor
-0.1
494
Normal
-0.1
472
Normal
-0.1
135
Tumor
-0.1
818
Normal
-0.1
432
Normal
-0.1
642
Normal
-0.1
922
Normal
-0.1
516
Normal
-0.1
284
Normal
-0.1
462
Normal
-0.1
313
Tumor
-0.1
433
Tumor
-0.1
955
Tumor
-0.1
352
Normal
-0.1
412
Normal
-0.1
567
Tumor
-0.1
918
Normal
-0.1
911
Tumor
-0.1
914
Normal
-0.1
724
Normal
-0.1
132
Normal
-0.1
1042
Normal
-0.1
344
Normal
-0.1
923
Tumor
-0.1
488
Normal
-0.1
425
Tumor
-0.1
721
Tumor
-0.1
387
Tumor
-0.1
728
Normal
-0.1
696
Normal
-0.1
982
Normal
-0.1
944
Normal
-0.1
128
Normal
-0.1
355
Tumor
-0.1
954
Normal
-0.1
618
Normal
-0.1
328
Normal
-0.1
228
Normal
-0.1
983
Tumor
-0.1
124
Normal
-0.1
114
Normal
-0.1
786
Normal
-0.1
662
Normal
-0.1
615
Tumor
-0.1
571
Tumor
-0.1
426
Normal
-0.1
716
Normal
-0.1
862
Normal
-0.1
514
Normal
-0.1
477
Tumor
-0.1
386
Normal
-0.1
218
Normal
-0.1
148
Normal
-0.1
286
Normal
-0.1
414
Normal
-0.1
665
Tumor
-0.1
523
Tumor
-0.1
262
Normal
-0.2
864
Normal
-0.2
162
Normal
-0.2
628
Normal
-0.2
882
Normal
-0.2
527
Tumor
-0.2
172
Normal
-0.2
468
Normal
-0.2
298
Normal
-0.2
636
Normal
-0.2
342
Normal
-0.2
268
Normal
-0.2
314
Normal
-0.2
1022
Normal
-0.2
647
Tumor
-0.2
778
Normal
-0.2
785
Tumor
-0.2
738
Normal
-0.2
524
Normal
-0.2
858
Normal
-0.2
686
Normal
-0.2
1032
Normal
-0.2
358
Normal
-0.2
866
Normal
-0.2
981
Tumor
-0.2
138
Normal
-0.2
1028
Normal
-0.2
481
Tumor
-0.2
456
Normal
-0.2
695
Tumor
-0.2
742
Normal
-0.2
926
Normal
-0.2
868
Normal
-0.2
332
Normal
-0.2
1016
Normal
-0.2
423
Tumor
-0.2
136
Normal
-0.2
666
Normal
-0.2
616
Normal
-0.2
392
Normal
-0.3
383
Tumor
-0.3
452
Normal
-0.3
863
Tumor
-0.3
978
Normal
-0.3
272
Normal
-0.3
741
Tumor
-0.3
744
Normal
-0.3
362
Normal
-0.3
391
Tumor
-0.3
984
Normal
-0.3
1014
Normal
-0.3
574
Normal
-0.3
312
Normal
-0.3
396
Normal
-0.3
867
Tumor
-0.3
365
Tumor
-0.3
572
Normal
-0.3
232
Normal
-0.3
278
Normal
-0.3
354
Normal
-0.3
884
Normal
-0.3
568
Normal
-0.3
357
Tumor
-0.3
366
Normal
-0.3
464
Normal
-0.3
564
Normal
-0.3
558
Normal
-0.3
258
Normal
-0.4
384
Normal
-0.4
394
Normal
-0.4
376
Normal
-0.4
261
Tumor
-0.4
368
Normal
-0.4
388
Normal
-0.4
361
Tumor
-0.4
723
Tumor
-0.4
445
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
