MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.2 nTPM
HPA Brain:0.5 nTPM
GTEx:130.2 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:245.4 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 0.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.2
2019 Male, age 18, unknown 1.0
1827 Male, age 72, unknown 0.4
1830 Male, age 51, unknown 0.4
2411 Female, age 72, unknown 0.2
2586 Male, age 75, left hemisphere 0.2
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2666 Male, age 74, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.1
1828 Male, age 53, unknown 0.2
2016 Female, age 72, unknown 0.2
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Periaquaductal grey, anterior
nTPM: 0.5
1947 Male, age 18, unknown 1.0
1795 Male, age 51, unknown 0.4
2502 Female, age 75, unknown 0.2
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.1
2140 Male, age 76, both hemispheres 0.2
2053 Male, age 18, unknown 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 0.1
1817 Female, age 42, unknown 0.8
1815 Male, age 53, unknown 0.6
2667 Female, age 75, unknown 0.2
1816 Male, age 51, unknown 0.1
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.1
1821 Female, age 72, unknown 0.4
1904 Male, age 53, unknown 0.3
2725 Female, age 75, unknown 0.2
1865 Male, age 51, unknown 0.1
2503 Female, age 72, unknown 0.1
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 0.0
1916 Female, age 42, unknown 0.2
2590 Female, age 75, unknown 0.2
1851 Male, age 51, unknown 0.1
1889 Female, age 72, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2665 Male, age 74, both hemispheres 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 0.2
1895 Male, age 76, right hemisphere 0.4
1913 Female, age 42, unknown 0.4
2587 Male, age 74, left hemisphere 0.4
1995 Male, age 72, unknown 0.3
2664 Male, age 75, both hemispheres 0.2
2668 Female, age 75, unknown 0.2
1796 Male, age 53, unknown 0.1
1839 Male, age 51, unknown 0.1
2087 Female, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
Ventral tegmental area
nTPM: 0.2
2223 Female, age 72, unknown 0.4
2410 Female, age 72, unknown 0.4
2021 Male, age 53, unknown 0.2
1915 Female, age 42, unknown 0.1
1942 Male, age 51, unknown 0.1
2218 Male, age 76, both hemispheres 0.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.2
Samples: 139

Max nTPM: 233.2
Min nTPM: 75.4
Std nTPM: 26.0
Median nTPM: 128.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 233.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 229.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 205.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 204.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 185.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 182.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 173.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 172.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 170.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 166.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 164.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.5
Samples: 4

Max nTPM: 37.6
Min nTPM: 23.1
Sample A Female 37.6
Sample B Female 25.2
Sample C Male 32.0
Sample D Male 23.1
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 39.6
Min nTPM: 29.7
Sample A Female 29.7
Sample B Female 30.5
Sample C Male 39.6
Sample D Male 34.5
Periaqueductal gray
nTPM: 28.5
Samples: 3

Max nTPM: 32.6
Min nTPM: 26.0
Sample B Female 26.9
Sample C Male 32.6
Sample D Male 26.0
Superior colliculi
nTPM: 36.6
Samples: 4

Max nTPM: 42.3
Min nTPM: 30.2
Sample A Female 42.3
Sample B Female 30.2
Sample C Male 40.8
Sample D Male 33.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 245.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 245.5
Samples: 4

Max nTPM: 257.2
Min nTPM: 238.0
Sample A Male 248.6
Sample B Male 238.0
Sample C Female 238.0
Sample D Female 257.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
68321662 Antisense, RP_041130_02_H03, Mouse strain C57BL/6J (56 days, male) 4.3

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