We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NACC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
62.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
48.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NACC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
48.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
39.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.2
413
Tumor
1.0
285
Tumor
0.9
743
Tumor
0.8
227
Tumor
0.7
211
Tumor
0.7
814
Normal
0.7
943
Tumor
0.6
221
Tumor
0.6
131
Tumor
0.6
815
Tumor
0.6
545
Tumor
0.6
267
Tumor
0.6
965
Tumor
0.6
445
Tumor
0.5
777
Tumor
0.5
881
Tumor
0.5
361
Tumor
0.5
473
Tumor
0.5
363
Tumor
0.5
123
Tumor
0.5
647
Tumor
0.5
513
Tumor
0.5
113
Tumor
0.4
865
Tumor
0.4
967
Tumor
0.4
527
Tumor
0.4
161
Tumor
0.4
187
Tumor
0.4
913
Tumor
0.4
737
Tumor
0.4
523
Tumor
0.4
923
Tumor
0.4
665
Tumor
0.4
937
Tumor
0.4
724
Normal
0.4
297
Tumor
0.4
331
Tumor
0.4
567
Tumor
0.4
663
Tumor
0.4
755
Tumor
0.4
661
Tumor
0.3
431
Tumor
0.3
955
Tumor
0.3
141
Tumor
0.3
666
Normal
0.3
723
Tumor
0.3
217
Tumor
0.3
851
Tumor
0.3
713
Tumor
0.3
533
Tumor
0.3
311
Tumor
0.3
351
Tumor
0.3
472
Normal
0.3
188
Normal
0.3
385
Tumor
0.3
283
Tumor
0.3
921
Tumor
0.3
465
Tumor
0.3
463
Tumor
0.3
537
Tumor
0.3
125
Tumor
0.3
938
Normal
0.3
715
Tumor
0.2
698
Normal
0.2
147
Tumor
0.2
213
Tumor
0.2
741
Tumor
0.2
478
Normal
0.2
785
Tumor
0.2
983
Tumor
0.2
192
Normal
0.2
915
Tumor
0.2
467
Tumor
0.2
1045
Tumor
0.2
481
Tumor
0.2
662
Normal
0.2
877
Tumor
0.2
863
Tumor
0.2
963
Tumor
0.2
742
Normal
0.2
685
Tumor
0.2
861
Tumor
0.2
393
Tumor
0.2
975
Tumor
0.2
818
Normal
0.2
648
Normal
0.2
642
Normal
0.2
641
Tumor
0.2
857
Tumor
0.2
672
Normal
0.2
451
Tumor
0.2
452
Normal
0.2
925
Tumor
0.2
493
Tumor
0.2
738
Normal
0.2
1046
Normal
0.2
327
Tumor
0.2
474
Normal
0.2
528
Normal
0.2
357
Tumor
0.2
186
Normal
0.2
471
Tumor
0.2
534
Normal
0.2
628
Normal
0.2
786
Normal
0.2
951
Tumor
0.2
914
Normal
0.2
261
Tumor
0.2
433
Tumor
0.2
721
Tumor
0.2
277
Tumor
0.2
953
Tumor
0.2
697
Tumor
0.2
468
Normal
0.2
195
Tumor
0.2
341
Tumor
0.1
911
Tumor
0.1
618
Normal
0.1
448
Normal
0.1
477
Tumor
0.1
162
Normal
0.1
455
Tumor
0.1
671
Tumor
0.1
858
Normal
0.1
434
Normal
0.1
1022
Normal
0.1
1041
Tumor
0.1
353
Tumor
0.1
383
Tumor
0.1
137
Tumor
0.1
824
Normal
0.1
411
Tumor
0.1
272
Normal
0.1
191
Tumor
0.1
728
Normal
0.1
427
Tumor
0.1
617
Tumor
0.1
498
Normal
0.1
573
Tumor
0.1
443
Tumor
0.1
1016
Normal
0.1
525
Tumor
0.1
436
Normal
0.1
966
Normal
0.1
258
Normal
0.1
444
Normal
0.1
271
Tumor
0.1
664
Normal
0.1
464
Normal
0.1
365
Tumor
0.1
172
Normal
0.1
456
Normal
0.1
557
Tumor
0.1
262
Normal
0.1
1044
Normal
0.1
944
Normal
0.1
816
Normal
0.1
1026
Normal
0.1
232
Normal
0.1
462
Normal
0.1
355
Tumor
0.1
461
Tumor
0.1
362
Normal
0.1
1025
Tumor
0.0
447
Tumor
0.0
343
Tumor
0.0
1031
Tumor
0.0
135
Tumor
0.0
864
Normal
0.0
957
Tumor
0.0
882
Normal
0.0
554
Normal
0.0
1042
Normal
0.0
964
Normal
0.0
873
Tumor
0.0
1032
Normal
0.0
958
Normal
0.0
956
Normal
0.0
484
Normal
0.0
744
Normal
0.0
514
Normal
0.0
148
Normal
0.0
636
Normal
0.0
223
Tumor
0.0
497
Tumor
0.0
883
Tumor
0.0
867
Tumor
0.0
615
Tumor
0.0
954
Normal
0.0
553
Tumor
0.0
524
Normal
0.0
423
Tumor
0.0
218
Normal
0.0
298
Normal
0.0
546
Normal
0.0
313
Tumor
0.0
366
Normal
0.0
446
Normal
0.0
368
Normal
0.0
286
Normal
0.0
171
Tumor
0.0
884
Normal
0.0
538
Normal
0.0
414
Normal
0.0
487
Tumor
0.0
917
Tumor
0.0
127
Tumor
0.0
332
Normal
0.0
424
Normal
0.0
926
Normal
0.0
466
Normal
0.0
391
Tumor
0.0
817
Tumor
0.0
918
Normal
0.0
574
Normal
0.0
564
Normal
0.0
284
Normal
0.0
376
Normal
0.0
185
Tumor
0.0
852
Normal
-0.1
515
Tumor
-0.1
384
Normal
-0.1
224
Normal
-0.1
128
Normal
-0.1
491
Tumor
-0.1
114
Normal
-0.1
627
Tumor
-0.1
518
Normal
-0.1
526
Normal
-0.1
924
Normal
-0.1
558
Normal
-0.1
568
Normal
-0.1
352
Normal
-0.1
112
Tumor
-0.1
111
Normal
-0.1
367
Tumor
-0.1
488
Normal
-0.1
482
Normal
-0.1
823
Tumor
-0.1
976
Normal
-0.1
977
Tumor
-0.1
328
Normal
-0.1
428
Normal
-0.1
922
Normal
-0.1
756
Normal
-0.1
126
Normal
-0.1
746
Normal
-0.1
878
Normal
-0.1
314
Normal
-0.1
916
Normal
-0.1
912
Normal
-0.1
616
Normal
-0.1
228
Normal
-0.1
375
Tumor
-0.1
968
Normal
-0.1
196
Normal
-0.1
868
Normal
-0.1
142
Normal
-0.1
862
Normal
-0.1
727
Tumor
-0.2
517
Tumor
-0.2
563
Tumor
-0.2
415
Tumor
-0.2
268
Normal
-0.2
395
Tumor
-0.2
416
Normal
-0.2
722
Normal
-0.2
344
Normal
-0.2
222
Normal
-0.2
354
Normal
-0.2
1028
Normal
-0.2
866
Normal
-0.2
874
Normal
-0.2
494
Normal
-0.2
536
Normal
-0.2
392
Normal
-0.2
312
Normal
-0.2
1021
Tumor
-0.2
696
Normal
-0.2
412
Normal
-0.2
278
Normal
-0.2
422
Normal
-0.2
145
Tumor
-0.2
952
Normal
-0.2
635
Tumor
-0.2
358
Normal
-0.2
978
Normal
-0.2
686
Normal
-0.2
483
Tumor
-0.2
396
Normal
-0.2
257
Tumor
-0.2
1043
Tumor
-0.2
716
Normal
-0.2
214
Normal
-0.2
435
Tumor
-0.2
212
Normal
-0.3
136
Normal
-0.3
388
Normal
-0.3
138
Normal
-0.3
364
Normal
-0.3
535
Tumor
-0.3
124
Normal
-0.3
516
Normal
-0.3
132
Normal
-0.3
492
Normal
-0.3
432
Normal
-0.3
1027
Tumor
-0.3
231
Tumor
-0.3
778
Normal
-0.3
342
Normal
-0.3
426
Normal
-0.3
695
Tumor
-0.3
356
Normal
-0.3
745
Tumor
-0.3
714
Normal
-0.3
1015
Tumor
-0.3
146
Normal
-0.3
386
Normal
-0.3
572
Normal
-0.3
394
Normal
-0.4
387
Tumor
-0.4
984
Normal
-0.4
571
Tumor
-0.4
982
Normal
-0.4
981
Tumor
-0.4
425
Tumor
-0.4
421
Tumor
-0.4
1014
Normal
-0.5
1013
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
