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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP3A4 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
406.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6569.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5906.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5453.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5274.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5079.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4626.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4594.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4433.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4321.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4068.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3947.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3261.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3246.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3048.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2898.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2617.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2485.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2481.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2462.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2368.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2234.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2209.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2146.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1739.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1683.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1667.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1661.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1595.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1581.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1540.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1533.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1524.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1509.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1494.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1466.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1431.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1416.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1378.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1338.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1336.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1208.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1187.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1179.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1059.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1018.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
969.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
949.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
944.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
922.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
879.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
833.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
825.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
791.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
785.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
763.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
716.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
703.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
681.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
675.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
610.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
554.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
542.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
536.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
521.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
504.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
492.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
490.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
475.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
444.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
433.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
403.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
396.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
394.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
382.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
377.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
352.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
330.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
321.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
321.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
311.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
308.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
272.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
258.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
247.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
239.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
238.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
227.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
220.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
212.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
202.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
176.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
174.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
171.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
167.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
164.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
163.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
157.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
150.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
146.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
145.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
123.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
118.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
114.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
114.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
101.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
99.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
96.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
93.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
92.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
92.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
91.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
91.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
79.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
79.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
77.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
75.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
74.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
66.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
65.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
64.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
61.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
61.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
59.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
55.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
54.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
49.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
47.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
47.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
47.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
43.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
43.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
40.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP3A4 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
634.5
Number of samples
231
Samples
Sample
Description
TPM
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10294.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
6696.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6532.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
6447.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5473.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
5383.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5372.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
5231.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5103.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5103.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
4340.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4290.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4129.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3929.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3840.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3701.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
2979.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2668.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
2494.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2360.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2333.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2222.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2211.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
1786.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1558.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1507.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1487.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
1474.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1459.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1408.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
1398.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
1345.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1320.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
1219.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
1187.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1176.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1039.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
951.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
860.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
859.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
847.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
811.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
800.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
793.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
769.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
741.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
735.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
646.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
628.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
561.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
538.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
518.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
501.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
488.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
449.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
434.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
385.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
368.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
368.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
366.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
348.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
346.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
340.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
326.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
318.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
284.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
266.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
261.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
254.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
253.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
226.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
221.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
207.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
203.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
203.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
178.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
176.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
175.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
172.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
165.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
162.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
157.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
156.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
156.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
155.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
139.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
133.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
131.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
131.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
127.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
122.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
120.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
110.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
107.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
105.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
102.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
97.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
96.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
94.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
92.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
91.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
83.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
80.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
79.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
78.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
76.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
67.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
66.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
64.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
53.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
915
Tumor
2.3
741
Tumor
2.2
1027
Tumor
1.9
451
Tumor
1.6
342
Normal
1.6
171
Tumor
1.5
128
Normal
1.3
867
Tumor
1.2
568
Normal
1.2
818
Normal
1.2
1022
Normal
1.1
298
Normal
1.1
616
Normal
1.1
744
Normal
1.1
1028
Normal
1.1
878
Normal
1.1
636
Normal
1.1
488
Normal
1.1
698
Normal
1.0
354
Normal
1.0
452
Normal
1.0
714
Normal
1.0
332
Normal
1.0
231
Tumor
1.0
261
Tumor
1.0
426
Normal
1.0
172
Normal
0.9
723
Tumor
0.9
546
Normal
0.9
142
Normal
0.9
572
Normal
0.9
196
Normal
0.9
482
Normal
0.9
1032
Normal
0.9
911
Tumor
0.9
388
Normal
0.9
685
Tumor
0.9
862
Normal
0.8
344
Normal
0.8
738
Normal
0.8
376
Normal
0.8
686
Normal
0.8
466
Normal
0.8
446
Normal
0.8
222
Normal
0.8
278
Normal
0.8
924
Normal
0.8
314
Normal
0.8
861
Tumor
0.8
356
Normal
0.7
952
Normal
0.7
422
Normal
0.7
186
Normal
0.7
436
Normal
0.7
434
Normal
0.7
362
Normal
0.7
786
Normal
0.7
448
Normal
0.7
618
Normal
0.7
984
Normal
0.7
352
Normal
0.7
366
Normal
0.7
922
Normal
0.6
716
Normal
0.6
484
Normal
0.6
966
Normal
0.6
132
Normal
0.6
574
Normal
0.6
852
Normal
0.6
464
Normal
0.6
746
Normal
0.6
1046
Normal
0.6
214
Normal
0.6
956
Normal
0.6
816
Normal
0.6
358
Normal
0.6
232
Normal
0.6
1026
Normal
0.6
982
Normal
0.6
396
Normal
0.5
1016
Normal
0.5
1014
Normal
0.5
368
Normal
0.5
824
Normal
0.5
916
Normal
0.5
534
Normal
0.5
938
Normal
0.5
742
Normal
0.5
428
Normal
0.5
468
Normal
0.5
1041
Tumor
0.5
111
Normal
0.5
554
Normal
0.5
516
Normal
0.5
648
Normal
0.5
148
Normal
0.5
866
Normal
0.5
124
Normal
0.5
864
Normal
0.5
964
Normal
0.5
162
Normal
0.5
882
Normal
0.5
944
Normal
0.5
472
Normal
0.4
642
Normal
0.4
384
Normal
0.4
954
Normal
0.4
968
Normal
0.4
394
Normal
0.4
386
Normal
0.4
424
Normal
0.4
258
Normal
0.4
494
Normal
0.4
912
Normal
0.4
958
Normal
0.4
918
Normal
0.4
628
Normal
0.4
728
Normal
0.4
564
Normal
0.4
722
Normal
0.3
538
Normal
0.3
272
Normal
0.3
414
Normal
0.3
432
Normal
0.3
262
Normal
0.3
868
Normal
0.3
228
Normal
0.3
884
Normal
0.3
328
Normal
0.3
926
Normal
0.3
756
Normal
0.3
462
Normal
0.3
147
Tumor
0.3
392
Normal
0.3
268
Normal
0.3
456
Normal
0.3
858
Normal
0.2
138
Normal
0.2
514
Normal
0.2
416
Normal
0.2
976
Normal
0.2
126
Normal
0.2
227
Tumor
0.1
558
Normal
0.1
664
Normal
0.1
284
Normal
0.1
528
Normal
0.1
1042
Normal
0.1
914
Normal
0.1
662
Normal
0.1
286
Normal
0.0
492
Normal
0.0
363
Tumor
0.0
364
Normal
0.0
666
Normal
0.0
571
Tumor
0.0
224
Normal
0.0
312
Normal
0.0
212
Normal
0.0
526
Normal
0.0
412
Normal
0.0
478
Normal
0.0
498
Normal
-0.1
473
Tumor
-0.1
778
Normal
-0.1
518
Normal
-0.1
146
Normal
-0.2
1044
Normal
-0.2
615
Tumor
-0.2
874
Normal
-0.2
114
Normal
-0.2
188
Normal
-0.2
185
Tumor
-0.2
192
Normal
-0.2
955
Tumor
-0.2
696
Normal
-0.2
421
Tumor
-0.3
672
Normal
-0.3
127
Tumor
-0.3
474
Normal
-0.3
481
Tumor
-0.4
857
Tumor
-0.4
444
Normal
-0.4
447
Tumor
-0.4
978
Normal
-0.4
641
Tumor
-0.5
721
Tumor
-0.5
327
Tumor
-0.5
435
Tumor
-0.5
415
Tumor
-0.5
411
Tumor
-0.6
877
Tumor
-0.6
463
Tumor
-0.6
963
Tumor
-0.6
431
Tumor
-0.6
483
Tumor
-0.6
943
Tumor
-0.6
1045
Tumor
-0.6
713
Tumor
-0.6
277
Tumor
-0.6
297
Tumor
-0.7
341
Tumor
-0.7
353
Tumor
-0.7
536
Normal
-0.7
981
Tumor
-0.7
814
Normal
-0.7
823
Tumor
-0.7
617
Tumor
-0.7
627
Tumor
-0.7
218
Normal
-0.7
873
Tumor
-0.7
975
Tumor
-0.7
136
Normal
-0.7
461
Tumor
-0.7
695
Tumor
-0.8
727
Tumor
-0.8
524
Normal
-0.8
881
Tumor
-0.8
271
Tumor
-0.8
743
Tumor
-0.8
433
Tumor
-0.8
1013
Tumor
-0.8
257
Tumor
-0.9
1025
Tumor
-0.9
957
Tumor
-0.9
195
Tumor
-0.9
921
Tumor
-0.9
917
Tumor
-0.9
493
Tumor
-0.9
355
Tumor
-0.9
491
Tumor
-0.9
361
Tumor
-0.9
1015
Tumor
-0.9
423
Tumor
-0.9
563
Tumor
-0.9
455
Tumor
-1.0
343
Tumor
-1.0
557
Tumor
-1.0
187
Tumor
-1.0
112
Tumor
-1.0
977
Tumor
-1.0
465
Tumor
-1.1
1031
Tumor
-1.1
445
Tumor
-1.1
785
Tumor
-1.1
471
Tumor
-1.1
553
Tumor
-1.1
715
Tumor
-1.1
267
Tumor
-1.1
161
Tumor
-1.2
137
Tumor
-1.2
313
Tumor
-1.2
477
Tumor
-1.2
357
Tumor
-1.2
1043
Tumor
-1.3
223
Tumor
-1.3
517
Tumor
-1.3
863
Tumor
-1.3
487
Tumor
-1.3
383
Tumor
-1.3
365
Tumor
-1.3
217
Tumor
-1.4
467
Tumor
-1.4
537
Tumor
-1.4
923
Tumor
-1.4
967
Tumor
-1.4
953
Tumor
-1.4
545
Tumor
-1.4
737
Tumor
-1.4
755
Tumor
-1.5
925
Tumor
-1.5
393
Tumor
-1.5
125
Tumor
-1.5
635
Tumor
-1.5
513
Tumor
-1.5
131
Tumor
-1.6
745
Tumor
-1.6
851
Tumor
-1.6
813
Tumor
-1.6
443
Tumor
-1.6
497
Tumor
-1.6
145
Tumor
-1.6
331
Tumor
-1.6
815
Tumor
-1.6
413
Tumor
-1.6
221
Tumor
-1.7
777
Tumor
-1.7
191
Tumor
-1.7
567
Tumor
-1.7
883
Tumor
-1.7
1021
Tumor
-1.7
135
Tumor
-1.7
647
Tumor
-1.8
865
Tumor
-1.8
391
Tumor
-1.8
387
Tumor
-1.8
724
Normal
-1.8
697
Tumor
-1.8
965
Tumor
-1.8
141
Tumor
-1.8
983
Tumor
-1.9
351
Tumor
-1.9
573
Tumor
-1.9
913
Tumor
-1.9
213
Tumor
-1.9
427
Tumor
-1.9
311
Tumor
-2.0
425
Tumor
-2.0
525
Tumor
-2.0
367
Tumor
-2.0
375
Tumor
-2.0
817
Tumor
-2.1
285
Tumor
-2.1
527
Tumor
-2.2
515
Tumor
-2.2
523
Tumor
-2.2
395
Tumor
-2.2
951
Tumor
-2.2
937
Tumor
-2.2
671
Tumor
-2.3
283
Tumor
-2.3
211
Tumor
-2.3
113
Tumor
-2.4
123
Tumor
-2.4
665
Tumor
-2.4
533
Tumor
-2.4
385
Tumor
-2.5
535
Tumor
-2.5
663
Tumor
-2.8
661
Tumor
-3.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.