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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBQLN4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
87.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
83.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
63.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
62.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
53.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
46.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
45.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBQLN4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
231
Samples
Sample
Description
TPM
DO23528
0 years, female, NA, stage:2, alive, 1020 days
60.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
56.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
45.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.1
427
Tumor
0.9
123
Tumor
0.8
131
Tumor
0.7
965
Tumor
0.7
533
Tumor
0.7
351
Tumor
0.7
525
Tumor
0.7
171
Tumor
0.6
977
Tumor
0.6
271
Tumor
0.6
393
Tumor
0.5
231
Tumor
0.5
665
Tumor
0.5
463
Tumor
0.5
777
Tumor
0.5
553
Tumor
0.5
537
Tumor
0.5
685
Tumor
0.5
425
Tumor
0.5
147
Tumor
0.4
573
Tumor
0.4
221
Tumor
0.4
1021
Tumor
0.4
267
Tumor
0.4
863
Tumor
0.4
661
Tumor
0.4
1013
Tumor
0.4
523
Tumor
0.4
881
Tumor
0.4
743
Tumor
0.3
435
Tumor
0.3
327
Tumor
0.3
127
Tumor
0.3
331
Tumor
0.3
385
Tumor
0.3
383
Tumor
0.3
865
Tumor
0.3
727
Tumor
0.3
983
Tumor
0.3
671
Tumor
0.3
517
Tumor
0.3
515
Tumor
0.3
647
Tumor
0.3
951
Tumor
0.3
745
Tumor
0.3
724
Normal
0.2
487
Tumor
0.2
857
Tumor
0.2
473
Tumor
0.2
627
Tumor
0.2
957
Tumor
0.2
447
Tumor
0.2
921
Tumor
0.2
481
Tumor
0.2
497
Tumor
0.2
663
Tumor
0.2
477
Tumor
0.2
975
Tumor
0.2
471
Tumor
0.2
431
Tumor
0.2
191
Tumor
0.2
635
Tumor
0.2
527
Tumor
0.2
375
Tumor
0.2
411
Tumor
0.2
641
Tumor
0.2
913
Tumor
0.2
1043
Tumor
0.2
433
Tumor
0.2
545
Tumor
0.2
445
Tumor
0.2
1041
Tumor
0.2
911
Tumor
0.2
213
Tumor
0.2
391
Tumor
0.2
741
Tumor
0.1
963
Tumor
0.1
222
Normal
0.1
493
Tumor
0.1
415
Tumor
0.1
227
Tumor
0.1
484
Normal
0.1
125
Tumor
0.1
877
Tumor
0.1
455
Tumor
0.1
483
Tumor
0.1
915
Tumor
0.1
715
Tumor
0.1
285
Tumor
0.1
1015
Tumor
0.1
387
Tumor
0.1
554
Normal
0.1
867
Tumor
0.1
192
Normal
0.1
361
Tumor
0.1
161
Tumor
0.1
513
Tumor
0.1
557
Tumor
0.1
451
Tumor
0.1
861
Tumor
0.1
297
Tumor
0.1
357
Tumor
0.1
1031
Tumor
0.1
883
Tumor
0.1
141
Tumor
0.1
257
Tumor
0.1
465
Tumor
0.1
217
Tumor
0.1
697
Tumor
0.1
261
Tumor
0.0
488
Normal
0.0
917
Tumor
0.0
817
Tumor
0.0
737
Tumor
0.0
444
Normal
0.0
786
Normal
0.0
365
Tumor
0.0
196
Normal
0.0
666
Normal
0.0
211
Tumor
0.0
384
Normal
0.0
452
Normal
0.0
615
Tumor
0.0
1025
Tumor
0.0
283
Tumor
0.0
868
Normal
0.0
943
Tumor
0.0
313
Tumor
0.0
534
Normal
0.0
112
Tumor
0.0
461
Tumor
0.0
756
Normal
0.0
785
Tumor
0.0
1016
Normal
0.0
978
Normal
0.0
466
Normal
0.0
268
Normal
0.0
937
Tumor
0.0
662
Normal
0.0
232
Normal
0.0
967
Tumor
0.0
873
Tumor
0.0
698
Normal
0.0
858
Normal
0.0
424
Normal
0.0
428
Normal
0.0
723
Tumor
0.0
421
Tumor
0.0
1014
Normal
0.0
938
Normal
0.0
742
Normal
0.0
376
Normal
0.0
564
Normal
0.0
851
Tumor
0.0
472
Normal
0.0
982
Normal
0.0
546
Normal
0.0
494
Normal
0.0
953
Tumor
0.0
468
Normal
0.0
714
Normal
0.0
456
Normal
0.0
882
Normal
0.0
722
Normal
0.0
464
Normal
0.0
436
Normal
0.0
218
Normal
0.0
298
Normal
0.0
721
Tumor
0.0
648
Normal
0.0
572
Normal
-0.1
955
Tumor
-0.1
524
Normal
-0.1
491
Tumor
-0.1
135
Tumor
-0.1
145
Tumor
-0.1
672
Normal
-0.1
1032
Normal
-0.1
728
Normal
-0.1
716
Normal
-0.1
352
Normal
-0.1
498
Normal
-0.1
414
Normal
-0.1
462
Normal
-0.1
277
Tumor
-0.1
366
Normal
-0.1
918
Normal
-0.1
355
Tumor
-0.1
212
Normal
-0.1
448
Normal
-0.1
636
Normal
-0.1
426
Normal
-0.1
343
Tumor
-0.1
312
Normal
-0.1
574
Normal
-0.1
528
Normal
-0.1
914
Normal
-0.1
558
Normal
-0.1
864
Normal
-0.1
413
Tumor
-0.1
923
Tumor
-0.1
884
Normal
-0.1
258
Normal
-0.1
516
Normal
-0.1
354
Normal
-0.1
952
Normal
-0.1
1042
Normal
-0.1
538
Normal
-0.1
664
Normal
-0.1
341
Tumor
-0.1
926
Normal
-0.1
912
Normal
-0.1
518
Normal
-0.1
368
Normal
-0.1
356
Normal
-0.1
342
Normal
-0.1
1045
Tumor
-0.1
526
Normal
-0.1
954
Normal
-0.1
713
Tumor
-0.1
362
Normal
-0.1
814
Normal
-0.1
187
Tumor
-0.1
478
Normal
-0.1
272
Normal
-0.1
482
Normal
-0.1
964
Normal
-0.1
823
Tumor
-0.1
628
Normal
-0.1
422
Normal
-0.1
423
Tumor
-0.1
976
Normal
-0.1
686
Normal
-0.1
446
Normal
-0.1
984
Normal
-0.1
223
Tumor
-0.1
138
Normal
-0.1
332
Normal
-0.1
416
Normal
-0.1
813
Tumor
-0.1
535
Tumor
-0.1
284
Normal
-0.1
195
Tumor
-0.1
1022
Normal
-0.1
514
Normal
-0.1
358
Normal
-0.1
818
Normal
-0.1
474
Normal
-0.1
696
Normal
-0.1
755
Tumor
-0.1
862
Normal
-0.1
925
Tumor
-0.1
944
Normal
-0.1
214
Normal
-0.1
616
Normal
-0.1
1026
Normal
-0.1
571
Tumor
-0.1
746
Normal
-0.1
738
Normal
-0.1
916
Normal
-0.1
353
Tumor
-0.1
922
Normal
-0.1
981
Tumor
-0.1
278
Normal
-0.1
185
Tumor
-0.1
367
Tumor
-0.1
224
Normal
-0.1
262
Normal
-0.1
1044
Normal
-0.1
492
Normal
-0.2
228
Normal
-0.2
695
Tumor
-0.2
286
Normal
-0.2
364
Normal
-0.2
816
Normal
-0.2
113
Tumor
-0.2
642
Normal
-0.2
314
Normal
-0.2
1046
Normal
-0.2
958
Normal
-0.2
744
Normal
-0.2
956
Normal
-0.2
328
Normal
-0.2
968
Normal
-0.2
128
Normal
-0.2
467
Tumor
-0.2
824
Normal
-0.2
434
Normal
-0.2
126
Normal
-0.2
617
Tumor
-0.2
136
Normal
-0.2
866
Normal
-0.2
186
Normal
-0.2
137
Tumor
-0.2
148
Normal
-0.2
363
Tumor
-0.2
172
Normal
-0.2
878
Normal
-0.2
924
Normal
-0.2
563
Tumor
-0.2
778
Normal
-0.2
412
Normal
-0.2
618
Normal
-0.2
568
Normal
-0.2
386
Normal
-0.2
1028
Normal
-0.2
536
Normal
-0.2
396
Normal
-0.2
188
Normal
-0.2
1027
Tumor
-0.2
815
Tumor
-0.2
443
Tumor
-0.2
344
Normal
-0.2
852
Normal
-0.2
966
Normal
-0.2
311
Tumor
-0.2
162
Normal
-0.2
432
Normal
-0.2
392
Normal
-0.2
874
Normal
-0.2
132
Normal
-0.3
111
Normal
-0.3
142
Normal
-0.3
388
Normal
-0.3
394
Normal
-0.3
114
Normal
-0.3
124
Normal
-0.3
146
Normal
-0.4
395
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
