MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA Brain:18.3 nTPM
GTEx:37.5 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:6.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.3
2666 Male, age 74, left hemisphere 24.4
2828 Female, age 72, unknown 23.1
2586 Male, age 75, left hemisphere 21.0
2019 Male, age 18, unknown 17.9
1830 Male, age 51, unknown 15.3
1870 Female, age 42, unknown 14.9
1833 Male, age 53, unknown 14.7
2411 Female, age 72, unknown 14.4
2219 Male, age 76, both hemispheres 14.3
1827 Male, age 72, unknown 13.2
Dorsal raphe nucleus
nTPM: 14.5
1828 Male, age 53, unknown 20.0
2047 Male, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 12.9
2016 Female, age 72, unknown 12.1
2298 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 14.4
1890 Male, age 53, unknown 14.9
1848 Female, age 42, unknown 14.5
2849 Male, age 72, unknown 14.4
2097 Female, age 72, unknown 13.9
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 14.7
1947 Male, age 18, unknown 16.1
1795 Male, age 51, unknown 15.5
2502 Female, age 75, unknown 12.6
Periaquaductal grey, dorsal
nTPM: 14.0
2850 Male, age 76, both hemispheres 16.2
2464 Female, age 72, unknown 15.2
1840 Male, age 53, unknown 12.8
1831 Male, age 72, unknown 11.8
Periaquaductal grey, lateral
nTPM: 14.3
2140 Male, age 76, both hemispheres 16.7
2053 Male, age 18, unknown 14.5
2272 Male, age 74, both hemispheres 11.6
Pretectal area
nTPM: 14.5
2316 Male, age 76, right hemisphere 21.7
2007 Male, age 72, unknown 17.0
1817 Female, age 42, unknown 15.8
1944 Female, age 72, unknown 15.2
2667 Female, age 75, unknown 15.2
1816 Male, age 51, unknown 15.0
2825 Male, age 18, unknown 14.0
1815 Male, age 53, unknown 13.1
2407 Male, age 75, both hemispheres 11.8
2224 Female, age 72, unknown 11.4
2273 Male, age 74, both hemispheres 9.2
Red nucleus
nTPM: 18.3
2588 Male, age 74, left hemisphere 31.6
2227 Male, age 72, unknown 21.0
2769 Male, age 72, unknown 19.6
2584 Male, age 75, left hemisphere 17.7
1865 Male, age 51, unknown 16.9
2823 Male, age 76, right hemisphere 16.9
1821 Female, age 72, unknown 16.8
1904 Male, age 53, unknown 16.8
2725 Female, age 75, unknown 16.5
2785 Male, age 18, unknown 16.1
2503 Female, age 72, unknown 15.2
1954 Female, age 42, unknown 14.8
Substantia nigra
nTPM: 15.9
2665 Male, age 74, both hemispheres 28.4
2699 Male, age 18, unknown 17.7
1851 Male, age 51, unknown 15.6
1916 Female, age 42, unknown 15.4
1941 Male, age 53, unknown 15.1
1889 Female, age 72, unknown 14.6
2241 Male, age 72, unknown 14.5
2590 Female, age 75, unknown 14.0
2583 Male, age 75, right hemisphere 12.6
2409 Female, age 72, unknown 11.6
Superior colliculus
nTPM: 15.1
2664 Male, age 75, both hemispheres 19.9
2668 Female, age 75, unknown 19.4
2087 Female, age 72, unknown 17.3
2587 Male, age 74, left hemisphere 15.4
1839 Male, age 51, unknown 14.7
1995 Male, age 72, unknown 14.2
1796 Male, age 53, unknown 13.9
1913 Female, age 42, unknown 12.9
2261 Male, age 18, unknown 12.3
1895 Male, age 76, right hemisphere 11.1
Ventral tegmental area
nTPM: 14.5
2021 Male, age 53, unknown 15.9
1942 Male, age 51, unknown 15.4
2223 Female, age 72, unknown 15.1
2410 Female, age 72, unknown 14.8
1915 Female, age 42, unknown 13.4
2218 Male, age 76, both hemispheres 12.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.5
Samples: 139

Max nTPM: 116.2
Min nTPM: 7.7
Std nTPM: 19.9
Median nTPM: 32.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 116.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 111.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 95.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 94.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 87.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 86.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 86.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 80.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 71.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 71.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.1
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.0
Sample A Female 6.4
Sample B Female 7.0
Sample C Male 5.0
Sample D Male 6.0
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 30.0
Min nTPM: 5.3
Sample A Female 9.8
Sample B Female 6.0
Sample C Male 30.0
Sample D Male 5.3
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 6.8
Min nTPM: 5.4
Sample B Female 6.8
Sample C Male 6.0
Sample D Male 5.4
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 45.4
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 16.5
Sample C Male 45.4
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.3
Sample A Male 7.0
Sample B Male 5.9
Sample C Female 5.3
Sample D Female 6.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
112202195 Antisense, RP_110421_01_D07, Mouse strain C57BL/6J (56 days, male) 0.8
100144111 Antisense, RP_110421_01_D07, Mouse strain C57BL/6J (56 days, male) 0.2

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