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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RUSC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
73.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RUSC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
85.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
62.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
525
Tumor
1.7
411
Tumor
1.4
431
Tumor
1.4
427
Tumor
1.3
123
Tumor
1.2
968
Normal
1.1
435
Tumor
1.1
355
Tumor
1.1
963
Tumor
1.0
277
Tumor
1.0
567
Tumor
1.0
445
Tumor
0.9
497
Tumor
0.9
953
Tumor
0.8
388
Normal
0.8
387
Tumor
0.8
647
Tumor
0.7
368
Normal
0.7
951
Tumor
0.7
125
Tumor
0.7
958
Normal
0.7
663
Tumor
0.6
391
Tumor
0.6
396
Normal
0.6
392
Normal
0.6
386
Normal
0.6
957
Tumor
0.6
394
Normal
0.6
491
Tumor
0.5
393
Tumor
0.5
745
Tumor
0.5
444
Normal
0.5
487
Tumor
0.5
416
Normal
0.5
311
Tumor
0.5
127
Tumor
0.5
446
Normal
0.4
976
Normal
0.4
964
Normal
0.4
813
Tumor
0.4
331
Tumor
0.4
126
Normal
0.4
483
Tumor
0.4
965
Tumor
0.3
498
Normal
0.3
383
Tumor
0.3
484
Normal
0.3
415
Tumor
0.3
777
Tumor
0.3
493
Tumor
0.3
312
Normal
0.3
375
Tumor
0.3
428
Normal
0.3
488
Normal
0.3
728
Normal
0.2
727
Tumor
0.2
313
Tumor
0.2
571
Tumor
0.2
147
Tumor
0.2
785
Tumor
0.2
227
Tumor
0.2
211
Tumor
0.2
943
Tumor
0.2
534
Normal
0.2
615
Tumor
0.2
171
Tumor
0.2
472
Normal
0.1
384
Normal
0.1
724
Normal
0.1
283
Tumor
0.1
494
Normal
0.1
944
Normal
0.1
938
Normal
0.1
671
Tumor
0.1
228
Normal
0.1
432
Normal
0.1
482
Normal
0.1
523
Tumor
0.1
741
Tumor
0.1
641
Tumor
0.1
286
Normal
0.1
814
Normal
0.1
423
Tumor
0.1
564
Normal
0.1
546
Normal
0.1
572
Normal
0.1
471
Tumor
0.0
568
Normal
0.0
665
Tumor
0.0
492
Normal
0.0
412
Normal
0.0
212
Normal
0.0
574
Normal
0.0
426
Normal
0.0
314
Normal
0.0
723
Tumor
0.0
696
Normal
0.0
528
Normal
0.0
332
Normal
0.0
422
Normal
0.0
185
Tumor
0.0
224
Normal
0.0
636
Normal
0.0
414
Normal
0.0
436
Normal
0.0
278
Normal
0.0
538
Normal
0.0
966
Normal
0.0
421
Tumor
-0.1
413
Tumor
-0.1
161
Tumor
-0.1
385
Tumor
-0.1
284
Normal
-0.1
298
Normal
-0.1
474
Normal
-0.1
111
Normal
-0.1
461
Tumor
-0.1
425
Tumor
-0.1
553
Tumor
-0.1
481
Tumor
-0.1
616
Normal
-0.1
473
Tumor
-0.2
395
Tumor
-0.2
424
Normal
-0.2
573
Tumor
-0.2
297
Tumor
-0.2
517
Tumor
-0.2
112
Tumor
-0.2
434
Normal
-0.2
114
Normal
-0.2
477
Tumor
-0.2
558
Normal
-0.2
443
Tumor
-0.2
786
Normal
-0.2
478
Normal
-0.2
366
Normal
-0.2
661
Tumor
-0.2
742
Normal
-0.3
755
Tumor
-0.3
635
Tumor
-0.3
514
Normal
-0.3
187
Tumor
-0.3
162
Normal
-0.3
537
Tumor
-0.3
515
Tumor
-0.3
627
Tumor
-0.3
462
Normal
-0.3
188
Normal
-0.3
952
Normal
-0.3
672
Normal
-0.3
285
Tumor
-0.3
128
Normal
-0.3
526
Normal
-0.3
954
Normal
-0.4
518
Normal
-0.4
756
Normal
-0.4
666
Normal
-0.4
554
Normal
-0.4
376
Normal
-0.4
172
Normal
-0.4
563
Tumor
-0.4
737
Tumor
-0.4
516
Normal
-0.4
956
Normal
-0.4
433
Tumor
-0.4
628
Normal
-0.4
524
Normal
-0.4
642
Normal
-0.4
778
Normal
-0.4
744
Normal
-0.4
186
Normal
-0.5
367
Tumor
-0.5
533
Tumor
-0.5
124
Normal
-0.5
113
Tumor
-0.5
527
Tumor
-0.5
328
Normal
-0.5
648
Normal
-0.5
738
Normal
-0.5
148
Normal
-0.5
513
Tumor
-0.5
721
Tumor
-0.5
223
Tumor
-0.5
618
Normal
-0.5
545
Tumor
-0.6
364
Normal
-0.6
746
Normal
-0.6
557
Tumor
-0.6
695
Tumor
-0.6
361
Tumor
-0.6
664
Normal
-0.6
743
Tumor
-0.7
365
Tumor
-0.7
356
Normal
-0.7
937
Tumor
-0.7
662
Normal
-0.8
975
Tumor
-0.9
327
Tumor
-0.9
363
Tumor
-0.9
362
Normal
-1.0
967
Tumor
-1.1
955
Tumor
-1.1
617
Tumor
-1.2
722
Normal
-1.3
714
Normal
-1.5
686
Normal
-1.7
715
Tumor
-1.9
716
Normal
-2.2
685
Tumor
-2.3
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
271
Tumor
N/A
272
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
858
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.