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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRTC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
32.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRTC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
63.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
59.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
55.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
47.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
42.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
42.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
1.3
123
Tumor
1.2
425
Tumor
1.2
977
Tumor
1.1
431
Tumor
1.0
857
Tumor
1.0
957
Tumor
0.9
487
Tumor
0.8
131
Tumor
0.8
915
Tumor
0.8
823
Tumor
0.7
427
Tumor
0.7
965
Tumor
0.7
777
Tumor
0.6
867
Tumor
0.6
221
Tumor
0.6
647
Tumor
0.6
383
Tumor
0.6
863
Tumor
0.6
1021
Tumor
0.6
445
Tumor
0.6
881
Tumor
0.6
517
Tumor
0.6
567
Tumor
0.6
1013
Tumor
0.6
1031
Tumor
0.6
1027
Tumor
0.6
865
Tumor
0.5
816
Normal
0.5
537
Tumor
0.5
545
Tumor
0.5
911
Tumor
0.5
257
Tumor
0.5
715
Tumor
0.5
553
Tumor
0.5
721
Tumor
0.5
975
Tumor
0.5
361
Tumor
0.5
471
Tumor
0.5
1041
Tumor
0.4
883
Tumor
0.4
665
Tumor
0.4
231
Tumor
0.4
951
Tumor
0.4
477
Tumor
0.4
435
Tumor
0.4
533
Tumor
0.4
921
Tumor
0.4
818
Normal
0.4
515
Tumor
0.4
191
Tumor
0.4
953
Tumor
0.4
483
Tumor
0.4
213
Tumor
0.3
161
Tumor
0.3
741
Tumor
0.3
861
Tumor
0.3
925
Tumor
0.3
481
Tumor
0.3
327
Tumor
0.3
357
Tumor
0.3
525
Tumor
0.3
884
Normal
0.3
443
Tumor
0.2
852
Normal
0.2
497
Tumor
0.2
192
Normal
0.2
415
Tumor
0.2
493
Tumor
0.2
641
Tumor
0.2
744
Normal
0.2
877
Tumor
0.2
211
Tumor
0.2
984
Normal
0.2
574
Normal
0.2
491
Tumor
0.2
785
Tumor
0.2
473
Tumor
0.2
685
Tumor
0.1
1046
Normal
0.1
672
Normal
0.1
446
Normal
0.1
913
Tumor
0.1
147
Tumor
0.1
355
Tumor
0.1
573
Tumor
0.1
745
Tumor
0.1
451
Tumor
0.1
963
Tumor
0.1
498
Normal
0.1
171
Tumor
0.1
461
Tumor
0.1
527
Tumor
0.1
141
Tumor
0.1
716
Normal
0.1
912
Normal
0.1
978
Normal
0.1
135
Tumor
0.1
523
Tumor
0.1
387
Tumor
0.1
954
Normal
0.1
478
Normal
0.1
813
Tumor
0.1
195
Tumor
0.1
983
Tumor
0.1
513
Tumor
0.1
447
Tumor
0.1
222
Normal
0.1
743
Tumor
0.1
463
Tumor
0.1
1042
Normal
0.1
112
Tumor
0.1
444
Normal
0.1
433
Tumor
0.0
663
Tumor
0.0
1032
Normal
0.0
943
Tumor
0.0
1022
Normal
0.0
554
Normal
0.0
737
Tumor
0.0
695
Tumor
0.0
125
Tumor
0.0
375
Tumor
0.0
1045
Tumor
0.0
635
Tumor
0.0
666
Normal
0.0
923
Tumor
0.0
432
Normal
0.0
564
Normal
0.0
514
Normal
0.0
724
Normal
0.0
465
Tumor
0.0
484
Normal
0.0
283
Tumor
0.0
563
Tumor
0.0
436
Normal
0.0
1025
Tumor
0.0
662
Normal
0.0
494
Normal
0.0
944
Normal
0.0
882
Normal
0.0
866
Normal
0.0
742
Normal
0.0
196
Normal
0.0
1026
Normal
0.0
568
Normal
0.0
217
Tumor
0.0
648
Normal
0.0
536
Normal
0.0
874
Normal
0.0
1016
Normal
0.0
728
Normal
0.0
448
Normal
0.0
516
Normal
0.0
482
Normal
0.0
1028
Normal
0.0
351
Tumor
0.0
467
Tumor
0.0
416
Normal
0.0
413
Tumor
0.0
864
Normal
0.0
546
Normal
0.0
686
Normal
0.0
873
Tumor
0.0
267
Tumor
0.0
393
Tumor
0.0
698
Normal
-0.1
571
Tumor
-0.1
964
Normal
-0.1
434
Normal
-0.1
462
Normal
-0.1
982
Normal
-0.1
664
Normal
-0.1
271
Tumor
-0.1
862
Normal
-0.1
524
Normal
-0.1
615
Tumor
-0.1
924
Normal
-0.1
488
Normal
-0.1
137
Tumor
-0.1
114
Normal
-0.1
1015
Tumor
-0.1
696
Normal
-0.1
937
Tumor
-0.1
518
Normal
-0.1
661
Tumor
-0.1
385
Tumor
-0.1
572
Normal
-0.1
1014
Normal
-0.1
286
Normal
-0.1
214
Normal
-0.1
127
Tumor
-0.1
814
Normal
-0.1
952
Normal
-0.1
341
Tumor
-0.1
124
Normal
-0.1
528
Normal
-0.1
926
Normal
-0.1
738
Normal
-0.1
981
Tumor
-0.1
384
Normal
-0.1
128
Normal
-0.1
958
Normal
-0.1
558
Normal
-0.1
636
Normal
-0.1
218
Normal
-0.1
918
Normal
-0.1
285
Tumor
-0.1
727
Tumor
-0.1
492
Normal
-0.1
272
Normal
-0.1
756
Normal
-0.1
472
Normal
-0.1
343
Tumor
-0.1
224
Normal
-0.1
976
Normal
-0.2
557
Tumor
-0.2
671
Tumor
-0.2
868
Normal
-0.2
534
Normal
-0.2
778
Normal
-0.2
746
Normal
-0.2
228
Normal
-0.2
126
Normal
-0.2
411
Tumor
-0.2
723
Tumor
-0.2
538
Normal
-0.2
916
Normal
-0.2
428
Normal
-0.2
284
Normal
-0.2
391
Tumor
-0.2
468
Normal
-0.2
212
Normal
-0.2
1044
Normal
-0.2
722
Normal
-0.2
714
Normal
-0.2
786
Normal
-0.2
526
Normal
-0.2
966
Normal
-0.2
424
Normal
-0.2
955
Tumor
-0.2
262
Normal
-0.2
755
Tumor
-0.2
328
Normal
-0.2
956
Normal
-0.2
968
Normal
-0.2
878
Normal
-0.2
858
Normal
-0.2
697
Tumor
-0.2
455
Tumor
-0.2
261
Tumor
-0.2
456
Normal
-0.2
258
Normal
-0.2
452
Normal
-0.2
466
Normal
-0.3
464
Normal
-0.3
914
Normal
-0.3
922
Normal
-0.3
367
Tumor
-0.3
232
Normal
-0.3
617
Tumor
-0.3
938
Normal
-0.3
426
Normal
-0.3
364
Normal
-0.3
618
Normal
-0.3
642
Normal
-0.3
365
Tumor
-0.3
162
Normal
-0.3
474
Normal
-0.3
111
Normal
-0.3
824
Normal
-0.3
368
Normal
-0.3
354
Normal
-0.3
412
Normal
-0.3
187
Tumor
-0.3
362
Normal
-0.3
142
Normal
-0.3
223
Tumor
-0.3
376
Normal
-0.3
146
Normal
-0.3
268
Normal
-0.3
414
Normal
-0.3
713
Tumor
-0.3
422
Normal
-0.3
356
Normal
-0.4
145
Tumor
-0.4
423
Tumor
-0.4
113
Tumor
-0.4
366
Normal
-0.4
172
Normal
-0.4
136
Normal
-0.4
185
Tumor
-0.4
535
Tumor
-0.4
148
Normal
-0.4
917
Tumor
-0.4
421
Tumor
-0.4
352
Normal
-0.4
628
Normal
-0.4
138
Normal
-0.4
358
Normal
-0.5
627
Tumor
-0.5
353
Tumor
-0.5
616
Normal
-0.5
1043
Tumor
-0.5
132
Normal
-0.5
967
Tumor
-0.5
188
Normal
-0.5
186
Normal
-0.5
344
Normal
-0.5
227
Tumor
-0.6
342
Normal
-0.6
395
Tumor
-0.6
392
Normal
-0.6
396
Normal
-0.7
363
Tumor
-0.7
386
Normal
-0.8
311
Tumor
-0.8
815
Tumor
-0.8
394
Normal
-0.8
388
Normal
-0.9
278
Normal
-1.1
277
Tumor
-1.1
312
Normal
-1.2
297
Tumor
-1.2
313
Tumor
-1.2
314
Normal
-1.3
298
Normal
-1.3
331
Tumor
-1.5
851
Tumor
-1.6
332
Normal
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.