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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FLAD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
211.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
115.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
114.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
96.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
94.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
91.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
90.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
85.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
84.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
84.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
82.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
76.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
74.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
70.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
68.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
66.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
64.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
63.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
62.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
59.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
58.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
55.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
54.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
53.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
53.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
52.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
51.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
50.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
49.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
49.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
47.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
47.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
45.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
45.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
44.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
44.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
44.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
44.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
43.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
36.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
35.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FLAD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.6
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
88.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
82.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
73.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
65.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
64.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
59.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
50.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
50.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
50.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
49.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
47.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
46.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
40.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.5
427
Tumor
1.1
435
Tumor
1.0
383
Tumor
1.0
533
Tumor
0.9
627
Tumor
0.9
981
Tumor
0.8
431
Tumor
0.8
425
Tumor
0.7
571
Tumor
0.7
777
Tumor
0.7
221
Tumor
0.6
147
Tumor
0.6
567
Tumor
0.6
465
Tumor
0.6
231
Tumor
0.6
525
Tumor
0.6
641
Tumor
0.6
191
Tumor
0.5
1021
Tumor
0.5
911
Tumor
0.5
615
Tumor
0.5
513
Tumor
0.5
411
Tumor
0.5
393
Tumor
0.5
443
Tumor
0.5
745
Tumor
0.5
635
Tumor
0.5
277
Tumor
0.5
665
Tumor
0.5
915
Tumor
0.5
925
Tumor
0.5
171
Tumor
0.5
1043
Tumor
0.4
647
Tumor
0.4
573
Tumor
0.4
477
Tumor
0.4
697
Tumor
0.4
865
Tumor
0.4
497
Tumor
0.4
1031
Tumor
0.4
957
Tumor
0.3
491
Tumor
0.3
1041
Tumor
0.3
127
Tumor
0.3
1013
Tumor
0.3
213
Tumor
0.3
741
Tumor
0.3
267
Tumor
0.3
515
Tumor
0.3
977
Tumor
0.3
743
Tumor
0.3
685
Tumor
0.3
357
Tumor
0.3
487
Tumor
0.3
557
Tumor
0.3
161
Tumor
0.2
867
Tumor
0.2
921
Tumor
0.2
415
Tumor
0.2
327
Tumor
0.2
341
Tumor
0.2
447
Tumor
0.2
271
Tumor
0.2
881
Tumor
0.2
451
Tumor
0.2
861
Tumor
0.2
353
Tumor
0.2
227
Tumor
0.2
724
Normal
0.2
361
Tumor
0.2
445
Tumor
0.2
423
Tumor
0.2
172
Normal
0.2
342
Normal
0.2
461
Tumor
0.2
137
Tumor
0.2
713
Tumor
0.2
128
Normal
0.2
857
Tumor
0.2
813
Tumor
0.2
483
Tumor
0.2
937
Tumor
0.2
975
Tumor
0.1
358
Normal
0.1
823
Tumor
0.1
433
Tumor
0.1
436
Normal
0.1
481
Tumor
0.1
114
Normal
0.1
721
Tumor
0.1
141
Tumor
0.1
145
Tumor
0.1
873
Tumor
0.1
1025
Tumor
0.1
343
Tumor
0.1
951
Tumor
0.1
387
Tumor
0.1
642
Normal
0.1
314
Normal
0.1
331
Tumor
0.1
186
Normal
0.1
913
Tumor
0.1
432
Normal
0.1
162
Normal
0.1
883
Tumor
0.0
1027
Tumor
0.0
185
Tumor
0.0
785
Tumor
0.0
446
Normal
0.0
112
Tumor
0.0
568
Normal
0.0
563
Tumor
0.0
278
Normal
0.0
523
Tumor
0.0
663
Tumor
0.0
755
Tumor
0.0
471
Tumor
0.0
113
Tumor
0.0
426
Normal
0.0
195
Tumor
0.0
297
Tumor
0.0
414
Normal
0.0
1046
Normal
0.0
428
Normal
0.0
375
Tumor
0.0
261
Tumor
0.0
527
Tumor
0.0
473
Tumor
0.0
388
Normal
0.0
365
Tumor
0.0
953
Tumor
0.0
618
Normal
0.0
148
Normal
0.0
616
Normal
0.0
923
Tumor
0.0
564
Normal
0.0
332
Normal
0.0
344
Normal
0.0
217
Tumor
0.0
545
Tumor
0.0
222
Normal
0.0
636
Normal
0.0
914
Normal
-0.1
376
Normal
-0.1
553
Tumor
-0.1
698
Normal
-0.1
124
Normal
-0.1
196
Normal
-0.1
394
Normal
-0.1
111
Normal
-0.1
138
Normal
-0.1
424
Normal
-0.1
218
Normal
-0.1
298
Normal
-0.1
648
Normal
-0.1
354
Normal
-0.1
214
Normal
-0.1
463
Tumor
-0.1
396
Normal
-0.1
737
Tumor
-0.1
368
Normal
-0.1
356
Normal
-0.1
628
Normal
-0.1
126
Normal
-0.1
328
Normal
-0.1
786
Normal
-0.1
727
Tumor
-0.1
738
Normal
-0.1
312
Normal
-0.1
366
Normal
-0.1
422
Normal
-0.1
924
Normal
-0.1
462
Normal
-0.1
514
Normal
-0.1
395
Tumor
-0.1
392
Normal
-0.1
493
Tumor
-0.1
664
Normal
-0.1
877
Tumor
-0.1
352
Normal
-0.1
517
Tumor
-0.1
136
Normal
-0.1
695
Tumor
-0.1
466
Normal
-0.1
742
Normal
-0.1
188
Normal
-0.1
482
Normal
-0.1
416
Normal
-0.1
965
Tumor
-0.2
448
Normal
-0.2
723
Tumor
-0.2
722
Normal
-0.2
851
Tumor
-0.2
187
Tumor
-0.2
258
Normal
-0.2
537
Tumor
-0.2
232
Normal
-0.2
384
Normal
-0.2
391
Tumor
-0.2
756
Normal
-0.2
964
Normal
-0.2
1044
Normal
-0.2
671
Tumor
-0.2
452
Normal
-0.2
534
Normal
-0.2
135
Tumor
-0.2
223
Tumor
-0.2
666
Normal
-0.2
472
Normal
-0.2
963
Tumor
-0.2
386
Normal
-0.2
455
Tumor
-0.2
468
Normal
-0.2
132
Normal
-0.2
574
Normal
-0.2
125
Tumor
-0.2
744
Normal
-0.2
286
Normal
-0.2
938
Normal
-0.2
862
Normal
-0.2
1016
Normal
-0.2
662
Normal
-0.2
192
Normal
-0.2
912
Normal
-0.2
817
Tumor
-0.2
434
Normal
-0.2
944
Normal
-0.2
272
Normal
-0.2
464
Normal
-0.2
976
Normal
-0.2
362
Normal
-0.2
262
Normal
-0.2
364
Normal
-0.2
444
Normal
-0.2
922
Normal
-0.2
686
Normal
-0.2
868
Normal
-0.2
954
Normal
-0.2
484
Normal
-0.2
257
Tumor
-0.3
572
Normal
-0.3
884
Normal
-0.3
967
Tumor
-0.3
1014
Normal
-0.3
146
Normal
-0.3
488
Normal
-0.3
421
Tumor
-0.3
131
Tumor
-0.3
746
Normal
-0.3
858
Normal
-0.3
474
Normal
-0.3
1026
Normal
-0.3
412
Normal
-0.3
1045
Tumor
-0.3
982
Normal
-0.3
714
Normal
-0.3
1015
Tumor
-0.3
558
Normal
-0.3
968
Normal
-0.3
526
Normal
-0.3
518
Normal
-0.3
211
Tumor
-0.3
313
Tumor
-0.3
1032
Normal
-0.3
978
Normal
-0.3
728
Normal
-0.3
882
Normal
-0.3
528
Normal
-0.3
715
Tumor
-0.3
952
Normal
-0.3
672
Normal
-0.3
824
Normal
-0.3
818
Normal
-0.3
1028
Normal
-0.3
363
Tumor
-0.3
351
Tumor
-0.3
864
Normal
-0.3
778
Normal
-0.3
866
Normal
-0.3
516
Normal
-0.3
268
Normal
-0.3
958
Normal
-0.3
228
Normal
-0.3
926
Normal
-0.3
1022
Normal
-0.3
212
Normal
-0.3
984
Normal
-0.3
456
Normal
-0.3
696
Normal
-0.3
874
Normal
-0.3
284
Normal
-0.3
142
Normal
-0.3
878
Normal
-0.3
956
Normal
-0.4
546
Normal
-0.4
918
Normal
-0.4
355
Tumor
-0.4
966
Normal
-0.4
863
Tumor
-0.4
716
Normal
-0.4
617
Tumor
-0.4
536
Normal
-0.4
367
Tumor
-0.4
816
Normal
-0.4
494
Normal
-0.4
983
Tumor
-0.4
524
Normal
-0.4
916
Normal
-0.4
413
Tumor
-0.4
814
Normal
-0.4
224
Normal
-0.4
283
Tumor
-0.4
955
Tumor
-0.4
492
Normal
-0.4
554
Normal
-0.4
1042
Normal
-0.5
385
Tumor
-0.5
661
Tumor
-0.5
498
Normal
-0.5
467
Tumor
-0.5
285
Tumor
-0.5
535
Tumor
-0.5
478
Normal
-0.6
852
Normal
-0.6
943
Tumor
-0.6
538
Normal
-0.6
917
Tumor
-0.7
311
Tumor
-0.7
815
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
