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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JAML is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
51.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
481
Tumor
1.4
388
Normal
1.3
482
Normal
1.3
394
Normal
1.2
1041
Tumor
1.2
616
Normal
1.1
298
Normal
1.0
314
Normal
1.0
473
Tumor
1.0
617
Tumor
1.0
278
Normal
1.0
386
Normal
0.9
396
Normal
0.9
312
Normal
0.9
533
Tumor
0.9
332
Normal
0.9
911
Tumor
0.9
868
Normal
0.8
267
Tumor
0.8
1025
Tumor
0.8
965
Tumor
0.7
367
Tumor
0.7
125
Tumor
0.7
361
Tumor
0.7
824
Normal
0.7
392
Normal
0.7
135
Tumor
0.7
534
Normal
0.7
171
Tumor
0.6
715
Tumor
0.6
546
Normal
0.6
448
Normal
0.6
137
Tumor
0.6
867
Tumor
0.6
1046
Normal
0.6
132
Normal
0.5
162
Normal
0.5
528
Normal
0.5
721
Tumor
0.5
436
Normal
0.5
877
Tumor
0.5
925
Tumor
0.5
981
Tumor
0.5
982
Normal
0.5
553
Tumor
0.5
138
Normal
0.5
671
Tumor
0.5
268
Normal
0.5
615
Tumor
0.5
648
Normal
0.5
1026
Normal
0.5
914
Normal
0.4
641
Tumor
0.4
1045
Tumor
0.4
142
Normal
0.4
1014
Normal
0.4
912
Normal
0.4
148
Normal
0.4
1016
Normal
0.4
172
Normal
0.4
136
Normal
0.4
666
Normal
0.4
261
Tumor
0.4
968
Normal
0.4
554
Normal
0.4
272
Normal
0.4
922
Normal
0.4
146
Normal
0.3
467
Tumor
0.3
232
Normal
0.3
462
Normal
0.3
944
Normal
0.3
145
Tumor
0.3
363
Tumor
0.3
415
Tumor
0.3
126
Normal
0.3
535
Tumor
0.3
918
Normal
0.3
258
Normal
0.3
882
Normal
0.3
665
Tumor
0.3
664
Normal
0.3
861
Tumor
0.3
231
Tumor
0.3
362
Normal
0.3
628
Normal
0.3
884
Normal
0.3
383
Tumor
0.3
1028
Normal
0.3
356
Normal
0.3
131
Tumor
0.3
186
Normal
0.3
964
Normal
0.3
328
Normal
0.3
262
Normal
0.3
913
Tumor
0.3
188
Normal
0.3
452
Normal
0.3
331
Tumor
0.2
1042
Normal
0.2
223
Tumor
0.2
663
Tumor
0.2
538
Normal
0.2
954
Normal
0.2
464
Normal
0.2
1032
Normal
0.2
446
Normal
0.2
494
Normal
0.2
451
Tumor
0.2
368
Normal
0.2
958
Normal
0.2
366
Normal
0.2
921
Tumor
0.2
228
Normal
0.2
471
Tumor
0.2
816
Normal
0.2
227
Tumor
0.2
866
Normal
0.2
376
Normal
0.2
432
Normal
0.2
185
Tumor
0.2
714
Normal
0.2
722
Normal
0.2
636
Normal
0.2
297
Tumor
0.2
527
Tumor
0.2
1044
Normal
0.2
642
Normal
0.2
916
Normal
0.1
224
Normal
0.1
455
Tumor
0.1
698
Normal
0.1
924
Normal
0.1
435
Tumor
0.1
187
Tumor
0.1
311
Tumor
0.1
286
Normal
0.1
976
Normal
0.1
672
Normal
0.1
963
Tumor
0.1
956
Normal
0.1
456
Normal
0.1
365
Tumor
0.1
878
Normal
0.1
472
Normal
0.1
862
Normal
0.1
387
Tumor
0.1
883
Tumor
0.1
864
Normal
0.1
975
Tumor
0.1
716
Normal
0.1
141
Tumor
0.1
952
Normal
0.1
461
Tumor
0.1
466
Normal
0.1
474
Normal
0.1
161
Tumor
0.1
283
Tumor
0.1
627
Tumor
0.0
662
Normal
0.0
938
Normal
0.0
635
Tumor
0.0
375
Tumor
0.0
478
Normal
0.0
926
Normal
0.0
881
Tumor
0.0
327
Tumor
0.0
647
Tumor
0.0
468
Normal
0.0
1031
Tumor
0.0
1027
Tumor
0.0
697
Tumor
0.0
431
Tumor
0.0
384
Normal
0.0
271
Tumor
0.0
212
Normal
0.0
277
Tumor
0.0
818
Normal
0.0
124
Normal
0.0
686
Normal
0.0
257
Tumor
-0.1
915
Tumor
-0.1
874
Normal
-0.1
696
Normal
-0.1
463
Tumor
-0.1
537
Tumor
-0.1
447
Tumor
-0.1
433
Tumor
-0.1
284
Normal
-0.1
444
Normal
-0.1
966
Normal
-0.1
492
Normal
-0.1
488
Normal
-0.1
823
Tumor
-0.1
123
Tumor
-0.1
477
Tumor
-0.1
364
Normal
-0.1
967
Tumor
-0.1
713
Tumor
-0.1
785
Tumor
-0.1
111
Normal
-0.1
685
Tumor
-0.1
393
Tumor
-0.1
984
Normal
-0.2
857
Tumor
-0.2
1021
Tumor
-0.2
113
Tumor
-0.2
852
Normal
-0.2
786
Normal
-0.2
114
Normal
-0.2
863
Tumor
-0.2
746
Normal
-0.2
434
Normal
-0.2
858
Normal
-0.2
498
Normal
-0.2
618
Normal
-0.2
313
Tumor
-0.2
412
Normal
-0.2
951
Tumor
-0.2
285
Tumor
-0.2
756
Normal
-0.2
741
Tumor
-0.3
493
Tumor
-0.3
955
Tumor
-0.3
978
Normal
-0.3
127
Tumor
-0.3
983
Tumor
-0.3
1043
Tumor
-0.3
536
Normal
-0.3
484
Normal
-0.3
661
Tumor
-0.4
112
Tumor
-0.4
695
Tumor
-0.4
778
Normal
-0.4
465
Tumor
-0.4
777
Tumor
-0.4
128
Normal
-0.4
755
Tumor
-0.5
923
Tumor
-0.5
416
Normal
-0.5
1022
Normal
-0.5
147
Tumor
-0.5
728
Normal
-0.5
443
Tumor
-0.5
483
Tumor
-0.5
545
Tumor
-0.5
873
Tumor
-0.5
814
Normal
-0.5
445
Tumor
-0.6
851
Tumor
-0.6
817
Tumor
-0.6
745
Tumor
-0.6
977
Tumor
-0.7
865
Tumor
-0.7
491
Tumor
-0.7
957
Tumor
-0.8
937
Tumor
-0.8
815
Tumor
-0.8
738
Normal
-0.8
813
Tumor
-0.9
355
Tumor
-0.9
211
Tumor
-0.9
1015
Tumor
-0.9
953
Tumor
-1.0
742
Normal
-1.0
1013
Tumor
-1.0
391
Tumor
-1.0
411
Tumor
-1.1
943
Tumor
-1.1
395
Tumor
-1.1
744
Normal
-1.1
487
Tumor
-1.2
723
Tumor
-1.2
497
Tumor
-1.2
917
Tumor
-1.2
724
Normal
-1.6
727
Tumor
-1.8
743
Tumor
-2.1
737
Tumor
-2.2
385
Tumor
-2.4
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
