MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:104.8 nTPM
GTEx:10.6 nTPM
FANTOM5:181.1 Scaled Tags Per Million
Pig:80.8 nTPM
Mouse:60.0 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.5
2019 Male, age 18, unknown 111.8
2586 Male, age 75, left hemisphere 103.9
2411 Female, age 72, unknown 103.5
1833 Male, age 53, unknown 98.0
1830 Male, age 51, unknown 96.2
1870 Female, age 42, unknown 92.3
2219 Male, age 76, both hemispheres 92.0
2828 Female, age 72, unknown 90.5
1827 Male, age 72, unknown 87.3
2666 Male, age 74, left hemisphere 79.6
Dorsal raphe nucleus
nTPM: 74.2
2750 Male, age 76, both hemispheres 93.6
2016 Female, age 72, unknown 77.8
1828 Male, age 53, unknown 74.1
2047 Male, age 72, unknown 67.0
2298 Female, age 72, unknown 58.4
Inferior colliculus
nTPM: 84.9
1890 Male, age 53, unknown 90.7
2849 Male, age 72, unknown 89.5
2097 Female, age 72, unknown 81.2
1848 Female, age 42, unknown 78.3
Median raphe nucleus
nTPM: 76.0
2220 Male, age 76, midline 76.0
Periaquaductal grey, anterior
nTPM: 82.9
2502 Female, age 75, unknown 87.6
1947 Male, age 18, unknown 85.7
1795 Male, age 51, unknown 75.4
Periaquaductal grey, dorsal
nTPM: 67.0
2464 Female, age 72, unknown 83.6
1840 Male, age 53, unknown 66.2
1831 Male, age 72, unknown 62.3
2850 Male, age 76, both hemispheres 55.9
Periaquaductal grey, lateral
nTPM: 79.0
2272 Male, age 74, both hemispheres 86.4
2053 Male, age 18, unknown 77.3
2140 Male, age 76, both hemispheres 73.4
Pretectal area
nTPM: 90.7
2007 Male, age 72, unknown 109.9
1817 Female, age 42, unknown 101.8
1815 Male, age 53, unknown 99.7
2316 Male, age 76, right hemisphere 97.9
1816 Male, age 51, unknown 95.5
1944 Female, age 72, unknown 92.5
2407 Male, age 75, both hemispheres 92.1
2667 Female, age 75, unknown 89.6
2825 Male, age 18, unknown 75.1
2273 Male, age 74, both hemispheres 72.9
2224 Female, age 72, unknown 70.5
Red nucleus
nTPM: 104.8
2785 Male, age 18, unknown 121.8
2588 Male, age 74, left hemisphere 120.2
2503 Female, age 72, unknown 113.5
1904 Male, age 53, unknown 110.9
2769 Male, age 72, unknown 109.4
2227 Male, age 72, unknown 107.8
1865 Male, age 51, unknown 106.9
1954 Female, age 42, unknown 101.2
1821 Female, age 72, unknown 98.2
2584 Male, age 75, left hemisphere 94.4
2823 Male, age 76, right hemisphere 94.1
2725 Female, age 75, unknown 79.6
Substantia nigra
nTPM: 87.3
2590 Female, age 75, unknown 104.8
2409 Female, age 72, unknown 99.2
1916 Female, age 42, unknown 93.4
2583 Male, age 75, right hemisphere 93.3
1889 Female, age 72, unknown 92.8
1851 Male, age 51, unknown 89.3
1941 Male, age 53, unknown 86.0
2241 Male, age 72, unknown 76.7
2699 Male, age 18, unknown 69.9
2665 Male, age 74, both hemispheres 68.1
Superior colliculus
nTPM: 90.2
1895 Male, age 76, right hemisphere 112.7
1913 Female, age 42, unknown 98.2
2261 Male, age 18, unknown 95.0
2668 Female, age 75, unknown 91.6
1995 Male, age 72, unknown 91.4
2587 Male, age 74, left hemisphere 87.9
1839 Male, age 51, unknown 87.1
2087 Female, age 72, unknown 81.2
1796 Male, age 53, unknown 80.0
2664 Male, age 75, both hemispheres 76.6
Ventral tegmental area
nTPM: 79.1
2410 Female, age 72, unknown 104.6
1915 Female, age 42, unknown 84.3
1942 Male, age 51, unknown 77.5
2218 Male, age 76, both hemispheres 75.2
2021 Male, age 53, unknown 66.9
2223 Female, age 72, unknown 66.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 139

Max nTPM: 26.4
Min nTPM: 2.6
Std nTPM: 4.9
Median nTPM: 9.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 26.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 25.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 23.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 23.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 21.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 181.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.1
FF:10158-103A5 76 years, female 181.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 80.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.8
Samples: 4

Max nTPM: 106.2
Min nTPM: 61.3
Sample A Female 71.3
Sample B Female 61.3
Sample C Male 84.5
Sample D Male 106.2
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 82.3
Min nTPM: 72.2
Sample A Female 72.2
Sample B Female 82.3
Sample C Male 79.0
Sample D Male 77.8
Periaqueductal gray
nTPM: 63.8
Samples: 3

Max nTPM: 70.7
Min nTPM: 59.8
Sample B Female 70.7
Sample C Male 59.8
Sample D Male 60.8
Superior colliculi
nTPM: 71.4
Samples: 4

Max nTPM: 85.8
Min nTPM: 46.1
Sample A Female 75.3
Sample B Female 46.1
Sample C Male 78.5
Sample D Male 85.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.0
Samples: 4

Max nTPM: 62.2
Min nTPM: 57.1
Sample A Male 57.1
Sample B Male 59.7
Sample C Female 60.8
Sample D Female 62.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69529059 Antisense, RP_050421_03_D07, Mouse strain C57BL/6J (56 days, male) 4.4
74881867 Antisense, RP_060315_04_D06, Mouse strain C57BL/6J (56 days, male) 1.9

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