We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHKBP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
165.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
134.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
127.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
96.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
91.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
89.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
83.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
81.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
70.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
68.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
59.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
55.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
50.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
50.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
44.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHKBP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
50.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
37.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
191
Tumor
0.9
172
Normal
0.8
186
Normal
0.8
162
Normal
0.8
865
Tumor
0.8
148
Normal
0.7
823
Tumor
0.7
557
Tumor
0.7
661
Tumor
0.6
467
Tumor
0.6
1041
Tumor
0.6
1025
Tumor
0.6
112
Tumor
0.5
443
Tumor
0.5
222
Normal
0.5
1027
Tumor
0.5
525
Tumor
0.5
188
Normal
0.5
217
Tumor
0.5
428
Normal
0.5
571
Tumor
0.5
464
Normal
0.4
743
Tumor
0.4
641
Tumor
0.4
213
Tumor
0.4
463
Tumor
0.4
572
Normal
0.4
451
Tumor
0.4
147
Tumor
0.4
497
Tumor
0.4
1021
Tumor
0.4
195
Tumor
0.4
357
Tumor
0.4
573
Tumor
0.4
466
Normal
0.4
468
Normal
0.4
221
Tumor
0.4
192
Normal
0.4
567
Tumor
0.4
196
Normal
0.4
558
Normal
0.4
813
Tumor
0.4
227
Tumor
0.4
422
Normal
0.3
814
Normal
0.3
426
Normal
0.3
393
Tumor
0.3
741
Tumor
0.3
873
Tumor
0.3
218
Normal
0.3
462
Normal
0.3
715
Tumor
0.3
424
Normal
0.3
727
Tumor
0.3
214
Normal
0.3
187
Tumor
0.3
745
Tumor
0.3
277
Tumor
0.3
777
Tumor
0.3
857
Tumor
0.3
258
Normal
0.3
533
Tumor
0.3
482
Normal
0.3
494
Normal
0.3
414
Normal
0.2
423
Tumor
0.2
685
Tumor
0.2
943
Tumor
0.2
267
Tumor
0.2
663
Tumor
0.2
481
Tumor
0.2
526
Normal
0.2
616
Normal
0.2
125
Tumor
0.2
524
Normal
0.2
568
Normal
0.2
534
Normal
0.2
313
Tumor
0.2
331
Tumor
0.2
1031
Tumor
0.2
432
Normal
0.2
881
Tumor
0.2
697
Tumor
0.2
421
Tumor
0.2
425
Tumor
0.2
721
Tumor
0.2
953
Tumor
0.2
474
Normal
0.2
268
Normal
0.2
563
Tumor
0.2
366
Normal
0.2
135
Tumor
0.2
665
Tumor
0.2
185
Tumor
0.2
546
Normal
0.2
523
Tumor
0.2
493
Tumor
0.2
913
Tumor
0.2
145
Tumor
0.2
395
Tumor
0.2
446
Normal
0.2
861
Tumor
0.2
456
Normal
0.2
272
Normal
0.2
487
Tumor
0.1
863
Tumor
0.1
951
Tumor
0.1
635
Tumor
0.1
286
Normal
0.1
445
Tumor
0.1
228
Normal
0.1
724
Normal
0.1
636
Normal
0.1
912
Normal
0.1
917
Tumor
0.1
356
Normal
0.1
911
Tumor
0.1
311
Tumor
0.1
391
Tumor
0.1
957
Tumor
0.1
1032
Normal
0.1
461
Tumor
0.1
742
Normal
0.1
472
Normal
0.1
271
Tumor
0.1
515
Tumor
0.1
817
Tumor
0.1
617
Tumor
0.1
867
Tumor
0.1
514
Normal
0.1
365
Tumor
0.1
914
Normal
0.1
364
Normal
0.1
564
Normal
0.1
554
Normal
0.1
278
Normal
0.1
361
Tumor
0.1
433
Tumor
0.1
937
Tumor
0.1
738
Normal
0.1
975
Tumor
0.1
384
Normal
0.1
314
Normal
0.1
877
Tumor
0.1
232
Normal
0.1
262
Normal
0.1
257
Tumor
0.1
862
Normal
0.1
131
Tumor
0.1
375
Tumor
0.1
1013
Tumor
0.1
436
Normal
0.1
882
Normal
0.1
328
Normal
0.1
492
Normal
0.1
574
Normal
0.1
513
Tumor
0.1
977
Tumor
0.1
884
Normal
0.1
647
Tumor
0.1
955
Tumor
0.0
471
Tumor
0.0
146
Normal
0.0
283
Tumor
0.0
642
Normal
0.0
737
Tumor
0.0
518
Normal
0.0
138
Normal
0.0
618
Normal
0.0
427
Tumor
0.0
483
Tumor
0.0
362
Normal
0.0
387
Tumor
0.0
983
Tumor
0.0
967
Tumor
0.0
351
Tumor
0.0
284
Normal
0.0
921
Tumor
0.0
368
Normal
0.0
132
Normal
0.0
713
Tumor
0.0
627
Tumor
0.0
212
Normal
0.0
926
Normal
0.0
343
Tumor
0.0
528
Normal
0.0
628
Normal
0.0
864
Normal
0.0
488
Normal
0.0
671
Tumor
0.0
297
Tumor
0.0
416
Normal
0.0
353
Tumor
0.0
444
Normal
0.0
868
Normal
0.0
376
Normal
0.0
394
Normal
0.0
431
Tumor
0.0
447
Tumor
0.0
452
Normal
0.0
756
Normal
0.0
491
Tumor
0.0
925
Tumor
0.0
386
Normal
0.0
211
Tumor
0.0
332
Normal
0.0
858
Normal
0.0
866
Normal
0.0
786
Normal
0.0
434
Normal
-0.1
536
Normal
-0.1
516
Normal
-0.1
383
Tumor
-0.1
224
Normal
-0.1
852
Normal
-0.1
392
Normal
-0.1
396
Normal
-0.1
824
Normal
-0.1
137
Tumor
-0.1
465
Tumor
-0.1
883
Tumor
-0.1
915
Tumor
-0.1
136
Normal
-0.1
412
Normal
-0.1
127
Tumor
-0.1
312
Normal
-0.1
755
Tumor
-0.1
517
Tumor
-0.1
358
Normal
-0.1
484
Normal
-0.1
413
Tumor
-0.1
341
Tumor
-0.1
723
Tumor
-0.1
1042
Normal
-0.1
385
Tumor
-0.1
722
Normal
-0.1
285
Tumor
-0.1
662
Normal
-0.1
388
Normal
-0.1
746
Normal
-0.1
411
Tumor
-0.1
922
Normal
-0.1
477
Tumor
-0.1
874
Normal
-0.1
161
Tumor
-0.1
223
Tumor
-0.1
615
Tumor
-0.1
851
Tumor
-0.1
261
Tumor
-0.1
113
Tumor
-0.1
1026
Normal
-0.1
231
Tumor
-0.1
171
Tumor
-0.1
123
Tumor
-0.1
367
Tumor
-0.1
923
Tumor
-0.1
954
Normal
-0.1
918
Normal
-0.2
1022
Normal
-0.2
666
Normal
-0.2
142
Normal
-0.2
982
Normal
-0.2
126
Normal
-0.2
938
Normal
-0.2
352
Normal
-0.2
963
Tumor
-0.2
478
Normal
-0.2
728
Normal
-0.2
415
Tumor
-0.2
816
Normal
-0.2
958
Normal
-0.2
1045
Tumor
-0.2
527
Tumor
-0.2
785
Tumor
-0.2
944
Normal
-0.2
327
Tumor
-0.2
818
Normal
-0.2
664
Normal
-0.2
978
Normal
-0.2
966
Normal
-0.2
976
Normal
-0.2
498
Normal
-0.2
1028
Normal
-0.2
878
Normal
-0.2
111
Normal
-0.2
968
Normal
-0.2
141
Tumor
-0.2
1016
Normal
-0.2
128
Normal
-0.2
455
Tumor
-0.2
344
Normal
-0.2
435
Tumor
-0.2
924
Normal
-0.2
298
Normal
-0.2
778
Normal
-0.2
553
Tumor
-0.2
648
Normal
-0.2
964
Normal
-0.2
1043
Tumor
-0.3
354
Normal
-0.3
916
Normal
-0.3
716
Normal
-0.3
342
Normal
-0.3
473
Tumor
-0.3
956
Normal
-0.3
815
Tumor
-0.3
696
Normal
-0.3
981
Tumor
-0.3
984
Normal
-0.3
124
Normal
-0.3
714
Normal
-0.3
538
Normal
-0.3
686
Normal
-0.4
672
Normal
-0.4
114
Normal
-0.4
537
Tumor
-0.4
363
Tumor
-0.4
1044
Normal
-0.4
545
Tumor
-0.4
952
Normal
-0.4
1014
Normal
-0.4
1046
Normal
-0.4
695
Tumor
-0.5
744
Normal
-0.5
448
Normal
-0.5
1015
Tumor
-0.5
965
Tumor
-0.5
355
Tumor
-0.6
535
Tumor
-0.8
698
Normal
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
