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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPSM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
108.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPSM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
881
Tumor
1.8
1021
Tumor
1.6
571
Tumor
1.5
427
Tumor
1.4
817
Tumor
1.3
951
Tumor
1.3
277
Tumor
1.2
341
Tumor
1.2
471
Tumor
1.2
743
Tumor
1.2
921
Tumor
1.2
435
Tumor
1.2
477
Tumor
1.2
483
Tumor
1.1
313
Tumor
1.1
635
Tumor
1.0
385
Tumor
1.0
923
Tumor
1.0
355
Tumor
1.0
525
Tumor
0.9
727
Tumor
0.9
351
Tumor
0.9
737
Tumor
0.9
671
Tumor
0.9
641
Tumor
0.8
515
Tumor
0.8
445
Tumor
0.8
513
Tumor
0.8
357
Tumor
0.8
1031
Tumor
0.8
343
Tumor
0.8
647
Tumor
0.8
271
Tumor
0.8
423
Tumor
0.8
1013
Tumor
0.8
937
Tumor
0.7
465
Tumor
0.7
967
Tumor
0.7
283
Tumor
0.7
443
Tumor
0.7
925
Tumor
0.6
533
Tumor
0.6
1027
Tumor
0.6
573
Tumor
0.6
873
Tumor
0.6
227
Tumor
0.6
221
Tumor
0.5
473
Tumor
0.5
447
Tumor
0.5
331
Tumor
0.5
857
Tumor
0.5
863
Tumor
0.5
557
Tumor
0.5
563
Tumor
0.5
963
Tumor
0.5
975
Tumor
0.5
493
Tumor
0.5
1045
Tumor
0.5
267
Tumor
0.4
721
Tumor
0.4
361
Tumor
0.4
977
Tumor
0.4
127
Tumor
0.4
553
Tumor
0.4
433
Tumor
0.4
297
Tumor
0.4
452
Normal
0.3
823
Tumor
0.3
455
Tumor
0.3
415
Tumor
0.3
425
Tumor
0.3
1025
Tumor
0.3
431
Tumor
0.3
883
Tumor
0.3
877
Tumor
0.3
697
Tumor
0.3
411
Tumor
0.2
536
Normal
0.2
186
Normal
0.2
278
Normal
0.2
231
Tumor
0.2
491
Tumor
0.2
213
Tumor
0.2
312
Normal
0.2
444
Normal
0.2
545
Tumor
0.2
185
Tumor
0.2
311
Tumor
0.1
135
Tumor
0.1
421
Tumor
0.1
395
Tumor
0.1
375
Tumor
0.1
172
Normal
0.1
161
Tumor
0.1
785
Tumor
0.1
538
Normal
0.1
917
Tumor
0.1
162
Normal
0.1
314
Normal
0.1
192
Normal
0.1
466
Normal
0.1
468
Normal
0.1
224
Normal
0.1
456
Normal
0.0
478
Normal
0.0
148
Normal
0.0
464
Normal
0.0
916
Normal
0.0
147
Tumor
0.0
953
Tumor
0.0
284
Normal
0.0
212
Normal
0.0
861
Tumor
-0.1
567
Tumor
-0.1
187
Tumor
-0.1
298
Normal
-0.1
141
Tumor
-0.1
393
Tumor
-0.1
958
Normal
-0.1
467
Tumor
-0.1
755
Tumor
-0.1
171
Tumor
-0.1
286
Normal
-0.1
188
Normal
-0.1
211
Tumor
-0.1
383
Tumor
-0.1
328
Normal
-0.1
461
Tumor
-0.1
957
Tumor
-0.1
714
Normal
-0.1
724
Normal
-0.1
696
Normal
-0.1
126
Normal
-0.2
364
Normal
-0.2
268
Normal
-0.2
978
Normal
-0.2
195
Tumor
-0.2
386
Normal
-0.2
228
Normal
-0.2
523
Tumor
-0.2
535
Tumor
-0.2
982
Normal
-0.2
984
Normal
-0.2
474
Normal
-0.2
852
Normal
-0.2
137
Tumor
-0.2
492
Normal
-0.2
285
Tumor
-0.2
746
Normal
-0.2
527
Tumor
-0.2
498
Normal
-0.2
786
Normal
-0.2
756
Normal
-0.2
416
Normal
-0.2
524
Normal
-0.2
494
Normal
-0.2
1016
Normal
-0.2
463
Tumor
-0.2
976
Normal
-0.2
777
Tumor
-0.2
462
Normal
-0.2
865
Tumor
-0.2
484
Normal
-0.3
983
Tumor
-0.3
918
Normal
-0.3
367
Tumor
-0.3
451
Tumor
-0.3
695
Tumor
-0.3
365
Tumor
-0.3
191
Tumor
-0.3
123
Tumor
-0.3
926
Normal
-0.3
344
Normal
-0.3
354
Normal
-0.3
356
Normal
-0.3
874
Normal
-0.3
368
Normal
-0.3
965
Tumor
-0.3
778
Normal
-0.3
124
Normal
-0.3
262
Normal
-0.3
384
Normal
-0.3
434
Normal
-0.3
482
Normal
-0.3
617
Tumor
-0.3
481
Tumor
-0.3
574
Normal
-0.4
572
Normal
-0.4
472
Normal
-0.4
864
Normal
-0.4
232
Normal
-0.4
412
Normal
-0.4
223
Tumor
-0.4
866
Normal
-0.4
954
Normal
-0.4
685
Tumor
-0.4
363
Tumor
-0.4
686
Normal
-0.4
922
Normal
-0.4
387
Tumor
-0.4
488
Normal
-0.4
362
Normal
-0.4
924
Normal
-0.4
426
Normal
-0.4
352
Normal
-0.4
432
Normal
-0.4
698
Normal
-0.4
388
Normal
-0.4
713
Tumor
-0.4
446
Normal
-0.4
394
Normal
-0.4
422
Normal
-0.4
642
Normal
-0.4
217
Tumor
-0.4
968
Normal
-0.4
436
Normal
-0.4
546
Normal
-0.4
448
Normal
-0.4
396
Normal
-0.4
366
Normal
-0.4
534
Normal
-0.4
428
Normal
-0.5
944
Normal
-0.5
943
Tumor
-0.5
1028
Normal
-0.5
376
Normal
-0.5
272
Normal
-0.5
862
Normal
-0.5
332
Normal
-0.5
392
Normal
-0.5
353
Tumor
-0.5
964
Normal
-0.5
1014
Normal
-0.5
528
Normal
-0.5
723
Tumor
-0.5
413
Tumor
-0.5
722
Normal
-0.5
214
Normal
-0.5
868
Normal
-0.5
738
Normal
-0.5
728
Normal
-0.5
414
Normal
-0.5
146
Normal
-0.5
663
Tumor
-0.5
564
Normal
-0.5
813
Tumor
-0.5
424
Normal
-0.5
966
Normal
-0.5
956
Normal
-0.5
142
Normal
-0.5
1032
Normal
-0.5
745
Tumor
-0.5
537
Tumor
-0.5
715
Tumor
-0.6
664
Normal
-0.6
716
Normal
-0.6
616
Normal
-0.6
952
Normal
-0.6
327
Tumor
-0.6
516
Normal
-0.6
554
Normal
-0.6
1044
Normal
-0.6
618
Normal
-0.6
1042
Normal
-0.6
222
Normal
-0.6
628
Normal
-0.6
358
Normal
-0.6
662
Normal
-0.6
615
Tumor
-0.6
816
Normal
-0.6
1046
Normal
-0.6
744
Normal
-0.6
636
Normal
-0.6
915
Tumor
-0.6
132
Normal
-0.6
196
Normal
-0.6
131
Tumor
-0.7
138
Normal
-0.7
558
Normal
-0.7
258
Normal
-0.7
391
Tumor
-0.7
218
Normal
-0.7
742
Normal
-0.7
867
Tumor
-0.7
145
Tumor
-0.7
568
Normal
-0.7
878
Normal
-0.7
938
Normal
-0.7
627
Tumor
-0.7
1043
Tumor
-0.7
342
Normal
-0.8
136
Normal
-0.8
261
Tumor
-0.8
818
Normal
-0.8
672
Normal
-0.8
497
Tumor
-0.8
128
Normal
-0.8
1041
Tumor
-0.8
514
Normal
-0.8
114
Normal
-0.9
913
Tumor
-0.9
955
Tumor
-0.9
113
Tumor
-0.9
1022
Normal
-0.9
814
Normal
-0.9
824
Normal
-0.9
111
Normal
-0.9
914
Normal
-0.9
257
Tumor
-1.0
741
Tumor
-1.0
518
Normal
-1.0
112
Tumor
-1.0
1015
Tumor
-1.0
125
Tumor
-1.0
1026
Normal
-1.0
526
Normal
-1.0
912
Normal
-1.0
981
Tumor
-1.1
648
Normal
-1.1
858
Normal
-1.1
884
Normal
-1.2
487
Tumor
-1.3
882
Normal
-1.3
815
Tumor
-1.3
517
Tumor
-1.3
666
Normal
-1.3
851
Tumor
-1.4
911
Tumor
-1.5
661
Tumor
-1.7
665
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
