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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRP1B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRP1B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
331
Tumor
1.4
661
Tumor
1.3
951
Tumor
1.3
351
Tumor
1.3
537
Tumor
1.3
743
Tumor
1.2
967
Tumor
1.2
983
Tumor
1.1
567
Tumor
1.1
1021
Tumor
1.1
737
Tumor
1.0
635
Tumor
1.0
727
Tumor
1.0
391
Tumor
0.9
523
Tumor
0.9
815
Tumor
0.9
517
Tumor
0.9
285
Tumor
0.9
671
Tumor
0.8
695
Tumor
0.8
367
Tumor
0.7
131
Tumor
0.7
113
Tumor
0.7
363
Tumor
0.7
357
Tumor
0.7
957
Tumor
0.7
1031
Tumor
0.6
171
Tumor
0.6
923
Tumor
0.6
571
Tumor
0.6
221
Tumor
0.6
483
Tumor
0.6
573
Tumor
0.6
395
Tumor
0.6
261
Tumor
0.6
393
Tumor
0.6
387
Tumor
0.6
685
Tumor
0.5
413
Tumor
0.5
487
Tumor
0.5
641
Tumor
0.5
1025
Tumor
0.5
617
Tumor
0.5
477
Tumor
0.5
341
Tumor
0.5
257
Tumor
0.5
525
Tumor
0.5
953
Tumor
0.5
647
Tumor
0.5
411
Tumor
0.5
557
Tumor
0.5
493
Tumor
0.5
785
Tumor
0.5
187
Tumor
0.5
455
Tumor
0.5
425
Tumor
0.5
355
Tumor
0.4
445
Tumor
0.4
817
Tumor
0.4
195
Tumor
0.4
814
Normal
0.4
473
Tumor
0.4
213
Tumor
0.4
861
Tumor
0.4
471
Tumor
0.3
297
Tumor
0.3
497
Tumor
0.3
921
Tumor
0.3
915
Tumor
0.3
267
Tumor
0.3
443
Tumor
0.3
123
Tumor
0.3
1013
Tumor
0.3
277
Tumor
0.3
447
Tumor
0.3
724
Normal
0.3
211
Tumor
0.3
881
Tumor
0.3
227
Tumor
0.2
865
Tumor
0.2
361
Tumor
0.2
385
Tumor
0.2
125
Tumor
0.2
431
Tumor
0.2
813
Tumor
0.2
427
Tumor
0.2
1041
Tumor
0.2
615
Tumor
0.2
515
Tumor
0.2
545
Tumor
0.2
527
Tumor
0.2
433
Tumor
0.2
975
Tumor
0.2
741
Tumor
0.2
627
Tumor
0.2
353
Tumor
0.2
327
Tumor
0.2
863
Tumor
0.1
451
Tumor
0.1
877
Tumor
0.1
977
Tumor
0.1
161
Tumor
0.1
755
Tumor
0.1
465
Tumor
0.1
283
Tumor
0.1
665
Tumor
0.1
421
Tumor
0.1
112
Tumor
0.1
911
Tumor
0.1
271
Tumor
0.1
223
Tumor
0.1
185
Tumor
0.1
461
Tumor
0.1
663
Tumor
0.1
513
Tumor
0.1
1027
Tumor
0.1
343
Tumor
0.1
883
Tumor
0.1
563
Tumor
0.0
484
Normal
0.0
715
Tumor
0.0
981
Tumor
0.0
423
Tumor
0.0
534
Normal
0.0
955
Tumor
0.0
311
Tumor
0.0
823
Tumor
0.0
963
Tumor
0.0
463
Tumor
0.0
481
Tumor
0.0
141
Tumor
0.0
851
Tumor
0.0
535
Tumor
0.0
231
Tumor
0.0
867
Tumor
0.0
858
Normal
0.0
553
Tumor
0.0
435
Tumor
0.0
943
Tumor
-0.1
664
Normal
-0.1
572
Normal
-0.1
375
Tumor
-0.1
467
Tumor
-0.1
697
Tumor
-0.1
1045
Tumor
-0.1
824
Normal
-0.1
518
Normal
-0.1
1014
Normal
-0.1
137
Tumor
-0.1
365
Tumor
-0.1
564
Normal
-0.1
648
Normal
-0.1
978
Normal
-0.1
982
Normal
-0.1
217
Tumor
-0.1
937
Tumor
-0.1
568
Normal
-0.1
628
Normal
-0.1
944
Normal
-0.1
232
Normal
-0.1
574
Normal
-0.1
491
Tumor
-0.1
744
Normal
-0.1
818
Normal
-0.1
938
Normal
-0.1
714
Normal
-0.1
873
Tumor
-0.1
396
Normal
-0.1
412
Normal
-0.1
284
Normal
-0.1
498
Normal
-0.1
415
Tumor
-0.1
376
Normal
-0.1
636
Normal
-0.1
127
Tumor
-0.1
228
Normal
-0.2
533
Tumor
-0.2
1016
Normal
-0.2
147
Tumor
-0.2
912
Normal
-0.2
968
Normal
-0.2
917
Tumor
-0.2
148
Normal
-0.2
713
Tumor
-0.2
616
Normal
-0.2
416
Normal
-0.2
666
Normal
-0.2
191
Tumor
-0.2
426
Normal
-0.2
188
Normal
-0.2
536
Normal
-0.2
422
Normal
-0.2
328
Normal
-0.2
984
Normal
-0.2
966
Normal
-0.2
492
Normal
-0.2
472
Normal
-0.2
696
Normal
-0.2
964
Normal
-0.2
258
Normal
-0.2
313
Tumor
-0.2
436
Normal
-0.2
952
Normal
-0.2
392
Normal
-0.2
298
Normal
-0.2
546
Normal
-0.2
462
Normal
-0.2
642
Normal
-0.2
524
Normal
-0.2
918
Normal
-0.2
866
Normal
-0.2
474
Normal
-0.2
135
Tumor
-0.2
262
Normal
-0.2
742
Normal
-0.2
672
Normal
-0.2
224
Normal
-0.2
364
Normal
-0.2
1032
Normal
-0.2
882
Normal
-0.2
528
Normal
-0.2
857
Tumor
-0.2
312
Normal
-0.2
286
Normal
-0.2
914
Normal
-0.2
114
Normal
-0.2
278
Normal
-0.2
916
Normal
-0.2
662
Normal
-0.2
494
Normal
-0.2
138
Normal
-0.2
716
Normal
-0.2
862
Normal
-0.2
482
Normal
-0.2
448
Normal
-0.2
723
Tumor
-0.2
728
Normal
-0.2
386
Normal
-0.2
738
Normal
-0.2
558
Normal
-0.3
816
Normal
-0.3
554
Normal
-0.3
356
Normal
-0.3
1028
Normal
-0.3
686
Normal
-0.3
954
Normal
-0.3
618
Normal
-0.3
1042
Normal
-0.3
428
Normal
-0.3
456
Normal
-0.3
958
Normal
-0.3
332
Normal
-0.3
1043
Tumor
-0.3
466
Normal
-0.3
922
Normal
-0.3
268
Normal
-0.3
136
Normal
-0.3
222
Normal
-0.3
132
Normal
-0.3
368
Normal
-0.3
124
Normal
-0.3
128
Normal
-0.3
746
Normal
-0.3
111
Normal
-0.3
383
Tumor
-0.3
424
Normal
-0.3
956
Normal
-0.3
488
Normal
-0.3
142
Normal
-0.3
516
Normal
-0.3
464
Normal
-0.3
698
Normal
-0.3
786
Normal
-0.3
526
Normal
-0.3
145
Tumor
-0.3
878
Normal
-0.3
538
Normal
-0.3
384
Normal
-0.3
722
Normal
-0.3
126
Normal
-0.3
852
Normal
-0.3
344
Normal
-0.3
362
Normal
-0.3
414
Normal
-0.3
388
Normal
-0.3
1046
Normal
-0.3
446
Normal
-0.3
514
Normal
-0.3
926
Normal
-0.3
314
Normal
-0.3
186
Normal
-0.3
172
Normal
-0.3
468
Normal
-0.3
352
Normal
-0.3
884
Normal
-0.3
1026
Normal
-0.3
976
Normal
-0.3
272
Normal
-0.3
162
Normal
-0.3
864
Normal
-0.4
212
Normal
-0.4
366
Normal
-0.4
924
Normal
-0.4
868
Normal
-0.4
146
Normal
-0.4
778
Normal
-0.4
434
Normal
-0.4
478
Normal
-0.4
913
Tumor
-0.4
444
Normal
-0.4
196
Normal
-0.4
1022
Normal
-0.4
192
Normal
-0.4
358
Normal
-0.4
452
Normal
-0.4
394
Normal
-0.4
1044
Normal
-0.4
214
Normal
-0.4
777
Tumor
-0.4
756
Normal
-0.5
432
Normal
-0.5
1015
Tumor
-0.5
342
Normal
-0.5
874
Normal
-0.5
218
Normal
-0.5
721
Tumor
-0.5
925
Tumor
-0.5
745
Tumor
-0.5
354
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
