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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRYAA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
89.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
49.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRYAA is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
298.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
187.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
167.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
110.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
110.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
109.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
109.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
98.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
95.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
94.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
91.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
73.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
73.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
73.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
72.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
72.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
69.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
68.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
65.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
58.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
57.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
53.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
53.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
52.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
47.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
43.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
35.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
953
Tumor
2.9
365
Tumor
2.6
171
Tumor
2.2
943
Tumor
2.0
357
Tumor
1.8
523
Tumor
1.8
361
Tumor
1.5
147
Tumor
1.5
395
Tumor
1.4
277
Tumor
1.3
727
Tumor
1.3
777
Tumor
1.3
615
Tumor
1.3
481
Tumor
1.2
515
Tumor
1.1
513
Tumor
1.1
493
Tumor
0.9
955
Tumor
0.9
571
Tumor
0.9
857
Tumor
0.8
423
Tumor
0.8
231
Tumor
0.8
785
Tumor
0.7
461
Tumor
0.6
755
Tumor
0.6
572
Normal
0.5
261
Tumor
0.5
564
Normal
0.5
568
Normal
0.5
455
Tumor
0.5
462
Normal
0.5
172
Normal
0.5
628
Normal
0.4
162
Normal
0.4
938
Normal
0.4
567
Tumor
0.4
464
Normal
0.3
394
Normal
0.3
574
Normal
0.3
786
Normal
0.3
557
Tumor
0.3
558
Normal
0.3
627
Tumor
0.3
414
Normal
0.3
916
Normal
0.3
616
Normal
0.2
648
Normal
0.2
666
Normal
0.2
482
Normal
0.2
915
Tumor
0.2
756
Normal
0.2
534
Normal
0.2
212
Normal
0.2
722
Normal
0.1
474
Normal
0.1
161
Tumor
0.1
466
Normal
0.1
428
Normal
0.1
472
Normal
0.1
258
Normal
0.1
912
Normal
0.1
148
Normal
0.1
312
Normal
0.1
268
Normal
0.1
883
Tumor
0.1
283
Tumor
0.1
914
Normal
0.1
618
Normal
0.1
695
Tumor
0.0
728
Normal
0.0
343
Tumor
0.0
185
Tumor
0.0
686
Normal
0.0
738
Normal
0.0
426
Normal
0.0
642
Normal
0.0
714
Normal
0.0
286
Normal
0.0
923
Tumor
0.0
664
Normal
0.0
952
Normal
0.0
187
Tumor
0.0
922
Normal
0.0
314
Normal
0.0
918
Normal
-0.1
392
Normal
-0.1
424
Normal
-0.1
196
Normal
-0.1
742
Normal
-0.1
123
Tumor
-0.1
213
Tumor
-0.1
778
Normal
-0.1
723
Tumor
-0.1
195
Tumor
-0.1
483
Tumor
-0.1
647
Tumor
-0.1
737
Tumor
-0.1
218
Normal
-0.1
514
Normal
-0.1
744
Normal
-0.1
222
Normal
-0.1
272
Normal
-0.2
376
Normal
-0.2
858
Normal
-0.2
362
Normal
-0.2
422
Normal
-0.2
391
Tumor
-0.2
221
Tumor
-0.2
672
Normal
-0.2
278
Normal
-0.2
636
Normal
-0.2
188
Normal
-0.2
214
Normal
-0.2
526
Normal
-0.2
746
Normal
-0.2
368
Normal
-0.2
388
Normal
-0.2
662
Normal
-0.2
262
Normal
-0.2
954
Normal
-0.2
332
Normal
-0.2
518
Normal
-0.2
396
Normal
-0.3
284
Normal
-0.3
944
Normal
-0.3
126
Normal
-0.3
516
Normal
-0.3
641
Tumor
-0.3
112
Tumor
-0.3
191
Tumor
-0.3
956
Normal
-0.3
128
Normal
-0.3
563
Tumor
-0.3
186
Normal
-0.3
573
Tumor
-0.3
217
Tumor
-0.3
267
Tumor
-0.3
884
Normal
-0.3
124
Normal
-0.3
477
Tumor
-0.3
114
Normal
-0.4
478
Normal
-0.4
716
Normal
-0.4
113
Tumor
-0.4
386
Normal
-0.4
617
Tumor
-0.4
111
Normal
-0.4
452
Normal
-0.4
366
Normal
-0.4
297
Tumor
-0.4
232
Normal
-0.4
127
Tumor
-0.5
125
Tumor
-0.5
824
Normal
-0.5
298
Normal
-0.5
473
Tumor
-0.5
878
Normal
-0.5
696
Normal
-0.5
433
Tumor
-0.5
882
Normal
-0.5
814
Normal
-0.5
528
Normal
-0.5
745
Tumor
-0.5
367
Tumor
-0.5
665
Tumor
-0.5
271
Tumor
-0.6
487
Tumor
-0.6
913
Tumor
-0.6
432
Normal
-0.6
192
Normal
-0.6
468
Normal
-0.7
713
Tumor
-0.7
524
Normal
-0.7
813
Tumor
-0.7
494
Normal
-0.7
721
Tumor
-0.7
852
Normal
-0.7
257
Tumor
-0.7
741
Tumor
-0.7
456
Normal
-0.7
387
Tumor
-0.7
465
Tumor
-0.7
818
Normal
-0.7
484
Normal
-0.7
525
Tumor
-0.7
444
Normal
-0.8
375
Tumor
-0.8
517
Tumor
-0.8
663
Tumor
-0.8
492
Normal
-0.8
383
Tumor
-0.9
533
Tumor
-0.9
436
Normal
-0.9
463
Tumor
-0.9
671
Tumor
-0.9
311
Tumor
-0.9
635
Tumor
-0.9
546
Normal
-0.9
816
Normal
-0.9
451
Tumor
-1.0
228
Normal
-1.0
384
Normal
-1.0
393
Tumor
-1.0
924
Normal
-1.0
313
Tumor
-1.0
917
Tumor
-1.0
385
Tumor
-1.1
911
Tumor
-1.1
538
Normal
-1.1
351
Tumor
-1.1
471
Tumor
-1.1
823
Tumor
-1.1
446
Normal
-1.1
331
Tumor
-1.1
926
Normal
-1.2
488
Normal
-1.2
223
Tumor
-1.2
421
Tumor
-1.2
498
Normal
-1.2
491
Tumor
-1.2
661
Tumor
-1.3
427
Tumor
-1.3
937
Tumor
-1.3
443
Tumor
-1.3
715
Tumor
-1.3
434
Normal
-1.3
685
Tumor
-1.4
467
Tumor
-1.4
353
Tumor
-1.4
881
Tumor
-1.4
342
Normal
-1.4
554
Normal
-1.4
951
Tumor
-1.5
354
Normal
-1.5
352
Normal
-1.5
445
Tumor
-1.5
344
Normal
-1.6
224
Normal
-1.6
743
Tumor
-1.6
431
Tumor
-1.6
425
Tumor
-1.7
724
Normal
-1.7
921
Tumor
-1.8
497
Tumor
-1.9
285
Tumor
-2.0
413
Tumor
-2.0
227
Tumor
-2.0
341
Tumor
-2.0
537
Tumor
-2.1
925
Tumor
-2.1
877
Tumor
-2.2
211
Tumor
-2.2
553
Tumor
-2.3
817
Tumor
-2.4
545
Tumor
-2.4
527
Tumor
-2.5
815
Tumor
-2.5
851
Tumor
-2.6
435
Tumor
-2.8
355
Tumor
N/A
356
Normal
N/A
358
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
957
Tumor
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
