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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DFFA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DFFA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
695
Tumor
1.1
965
Tumor
1.1
533
Tumor
0.8
663
Tumor
0.8
953
Tumor
0.8
571
Tumor
0.7
727
Tumor
0.7
1027
Tumor
0.7
685
Tumor
0.6
573
Tumor
0.6
525
Tumor
0.6
883
Tumor
0.5
515
Tumor
0.5
865
Tumor
0.5
161
Tumor
0.5
567
Tumor
0.5
951
Tumor
0.5
465
Tumor
0.5
513
Tumor
0.5
785
Tumor
0.4
741
Tumor
0.4
746
Normal
0.4
777
Tumor
0.4
943
Tumor
0.4
737
Tumor
0.4
1021
Tumor
0.4
461
Tumor
0.4
487
Tumor
0.4
925
Tumor
0.4
557
Tumor
0.3
425
Tumor
0.3
813
Tumor
0.3
283
Tumor
0.3
497
Tumor
0.3
491
Tumor
0.3
493
Tumor
0.3
915
Tumor
0.3
923
Tumor
0.3
313
Tumor
0.3
231
Tumor
0.3
1026
Normal
0.3
484
Normal
0.3
952
Normal
0.3
874
Normal
0.3
527
Tumor
0.3
714
Normal
0.3
125
Tumor
0.3
171
Tumor
0.3
1041
Tumor
0.3
536
Normal
0.3
546
Normal
0.3
141
Tumor
0.2
1022
Normal
0.2
938
Normal
0.2
858
Normal
0.2
112
Tumor
0.2
716
Normal
0.2
857
Tumor
0.2
355
Tumor
0.2
516
Normal
0.2
478
Normal
0.2
862
Normal
0.2
866
Normal
0.2
816
Normal
0.2
913
Tumor
0.2
1045
Tumor
0.2
686
Normal
0.2
123
Tumor
0.2
528
Normal
0.2
873
Tumor
0.2
957
Tumor
0.2
136
Normal
0.2
365
Tumor
0.2
922
Normal
0.2
696
Normal
0.2
473
Tumor
0.2
818
Normal
0.2
423
Tumor
0.2
534
Normal
0.2
375
Tumor
0.2
211
Tumor
0.2
545
Tumor
0.2
742
Normal
0.2
786
Normal
0.2
755
Tumor
0.2
738
Normal
0.2
724
Normal
0.2
364
Normal
0.2
698
Normal
0.2
472
Normal
0.2
756
Normal
0.2
132
Normal
0.2
367
Tumor
0.1
488
Normal
0.1
537
Tumor
0.1
357
Tumor
0.1
1032
Normal
0.1
1046
Normal
0.1
524
Normal
0.1
411
Tumor
0.1
535
Tumor
0.1
518
Normal
0.1
146
Normal
0.1
492
Normal
0.1
1028
Normal
0.1
981
Tumor
0.1
647
Tumor
0.1
944
Normal
0.1
1014
Normal
0.1
267
Tumor
0.1
824
Normal
0.1
864
Normal
0.1
554
Normal
0.1
483
Tumor
0.1
916
Normal
0.1
882
Normal
0.1
526
Normal
0.1
937
Tumor
0.1
224
Normal
0.1
212
Normal
0.1
723
Tumor
0.1
416
Normal
0.1
955
Tumor
0.1
918
Normal
0.1
868
Normal
0.1
448
Normal
0.1
1015
Tumor
0.1
185
Tumor
0.1
466
Normal
0.1
721
Tumor
0.1
958
Normal
0.1
968
Normal
0.1
114
Normal
0.1
984
Normal
0.1
648
Normal
0.1
574
Normal
0.1
745
Tumor
0.1
395
Tumor
0.1
368
Normal
0.1
356
Normal
0.1
142
Normal
0.1
977
Tumor
0.1
563
Tumor
0.1
697
Tumor
0.1
921
Tumor
0.1
884
Normal
0.1
778
Normal
0.1
1042
Normal
0.1
976
Normal
0.1
481
Tumor
0.1
192
Normal
0.1
138
Normal
0.1
456
Normal
0.1
954
Normal
0.1
924
Normal
0.1
538
Normal
0.0
261
Tumor
0.0
228
Normal
0.0
412
Normal
0.0
728
Normal
0.0
277
Tumor
0.0
627
Tumor
0.0
956
Normal
0.0
615
Tumor
0.0
498
Normal
0.0
391
Tumor
0.0
474
Normal
0.0
867
Tumor
0.0
982
Normal
0.0
186
Normal
0.0
257
Tumor
0.0
926
Normal
0.0
462
Normal
0.0
664
Normal
0.0
642
Normal
0.0
286
Normal
0.0
162
Normal
0.0
464
Normal
0.0
428
Normal
0.0
383
Tumor
0.0
722
Normal
0.0
814
Normal
0.0
1044
Normal
0.0
482
Normal
0.0
426
Normal
0.0
914
Normal
0.0
966
Normal
0.0
196
Normal
0.0
361
Tumor
0.0
362
Normal
0.0
514
Normal
0.0
451
Tumor
0.0
172
Normal
0.0
452
Normal
0.0
223
Tumor
0.0
351
Tumor
0.0
568
Normal
0.0
823
Tumor
0.0
137
Tumor
0.0
494
Normal
0.0
744
Normal
0.0
284
Normal
0.0
444
Normal
0.0
128
Normal
0.0
386
Normal
0.0
427
Tumor
0.0
422
Normal
0.0
358
Normal
0.0
222
Normal
0.0
436
Normal
0.0
878
Normal
0.0
1016
Normal
0.0
963
Tumor
0.0
366
Normal
0.0
564
Normal
0.0
188
Normal
0.0
376
Normal
0.0
616
Normal
0.0
342
Normal
0.0
311
Tumor
0.0
414
Normal
0.0
124
Normal
0.0
384
Normal
0.0
387
Tumor
-0.1
314
Normal
-0.1
126
Normal
-0.1
863
Tumor
-0.1
978
Normal
-0.1
227
Tumor
-0.1
111
Normal
-0.1
195
Tumor
-0.1
964
Normal
-0.1
468
Normal
-0.1
354
Normal
-0.1
477
Tumor
-0.1
618
Normal
-0.1
328
Normal
-0.1
424
Normal
-0.1
431
Tumor
-0.1
148
Normal
-0.1
187
Tumor
-0.1
661
Tumor
-0.1
218
Normal
-0.1
327
Tumor
-0.1
558
Normal
-0.1
881
Tumor
-0.1
394
Normal
-0.1
628
Normal
-0.1
344
Normal
-0.1
662
Normal
-0.1
353
Tumor
-0.1
278
Normal
-0.1
213
Tumor
-0.1
298
Normal
-0.1
415
Tumor
-0.1
446
Normal
-0.1
396
Normal
-0.1
635
Tumor
-0.1
447
Tumor
-0.1
232
Normal
-0.1
672
Normal
-0.1
636
Normal
-0.2
666
Normal
-0.2
214
Normal
-0.2
421
Tumor
-0.2
917
Tumor
-0.2
815
Tumor
-0.2
343
Tumor
-0.2
433
Tumor
-0.2
312
Normal
-0.2
713
Tumor
-0.2
743
Tumor
-0.2
817
Tumor
-0.2
572
Normal
-0.2
258
Normal
-0.2
851
Tumor
-0.2
332
Normal
-0.2
145
Tumor
-0.2
388
Normal
-0.2
113
Tumor
-0.2
852
Normal
-0.2
268
Normal
-0.2
147
Tumor
-0.2
217
Tumor
-0.2
341
Tumor
-0.2
272
Normal
-0.2
435
Tumor
-0.2
434
Normal
-0.3
983
Tumor
-0.3
455
Tumor
-0.3
523
Tumor
-0.3
262
Normal
-0.3
352
Normal
-0.3
385
Tumor
-0.3
392
Normal
-0.3
413
Tumor
-0.3
1043
Tumor
-0.3
131
Tumor
-0.3
715
Tumor
-0.3
135
Tumor
-0.3
912
Normal
-0.3
877
Tumor
-0.3
967
Tumor
-0.3
861
Tumor
-0.3
445
Tumor
-0.3
1025
Tumor
-0.3
467
Tumor
-0.4
393
Tumor
-0.4
297
Tumor
-0.4
517
Tumor
-0.4
285
Tumor
-0.4
363
Tumor
-0.4
975
Tumor
-0.4
471
Tumor
-0.4
432
Normal
-0.4
331
Tumor
-0.4
463
Tumor
-0.4
191
Tumor
-0.4
553
Tumor
-0.4
443
Tumor
-0.5
1031
Tumor
-0.5
221
Tumor
-0.5
617
Tumor
-0.5
127
Tumor
-0.5
671
Tumor
-0.6
911
Tumor
-0.6
665
Tumor
-0.6
641
Tumor
-0.7
271
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
