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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPON2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
120.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
738.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
666.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
582.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
545.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
519.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
450.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
436.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
422.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
401.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
397.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
396.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
382.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
375.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
356.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
344.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
344.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
336.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
328.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
323.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
316.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
298.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
285.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
282.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
279.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
279.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
268.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
267.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
265.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
265.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
258.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
257.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
242.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
241.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
238.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
235.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
235.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
233.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
232.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
230.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
228.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
227.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
225.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
224.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
224.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
222.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
218.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
216.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
208.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
205.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
203.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
202.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
199.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
199.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
199.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
195.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
194.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
194.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
194.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
190.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
188.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
186.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
185.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
185.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
183.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
181.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
180.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
178.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
178.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
175.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
175.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
174.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
173.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
172.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
172.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
172.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
170.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
169.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
169.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
169.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
168.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
166.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
166.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
166.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
163.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
163.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
163.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
162.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
161.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
159.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
159.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
157.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
156.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
156.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
155.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
155.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
155.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
153.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
152.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
151.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
149.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
148.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
148.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
147.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
145.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
145.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
145.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
144.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
143.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
142.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
141.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
141.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
139.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
138.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
137.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
137.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
136.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
136.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
134.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
134.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
134.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
133.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
133.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
132.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
131.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
131.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
129.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
127.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
127.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
126.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
124.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
123.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
122.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
122.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
121.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
121.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
121.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
120.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
119.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
119.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
115.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
115.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
115.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
114.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
114.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
114.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
113.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
113.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
112.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
111.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
110.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
110.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
108.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
107.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
107.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
107.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
106.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
105.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
104.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
104.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
104.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
103.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
103.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
103.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
103.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
102.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
102.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
102.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
100.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
100.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
98.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
97.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
97.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
96.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
95.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
94.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
94.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
92.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
91.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
91.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
90.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
89.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
89.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
88.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
87.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
87.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
87.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
86.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
86.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
85.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
85.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
85.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
84.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
84.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
83.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
83.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
82.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
82.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
82.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
82.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
82.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
82.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
82.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
81.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
81.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
80.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
79.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
79.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
77.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
77.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
77.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
77.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
76.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
75.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
75.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
75.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
75.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
74.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
74.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
73.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
72.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
71.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
69.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
69.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
68.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
68.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
67.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
66.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
66.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
65.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
64.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
63.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
63.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
62.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
62.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
61.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
61.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
60.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
60.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
60.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
59.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
59.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
59.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
58.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
58.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
58.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
58.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
58.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
57.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
57.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
54.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
54.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
53.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
53.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
52.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
52.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
52.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
50.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
50.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
50.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
49.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
47.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
47.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
47.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
45.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
44.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
42.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
33.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPON2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.8
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
690.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
567.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
431.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
312.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
273.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
250.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
244.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
244.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
239.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
232.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
232.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
231.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
205.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
198.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
192.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
187.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
187.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
182.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
182.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
175.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
173.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
167.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
167.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
165.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
165.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
165.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
163.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
161.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
158.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
158.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
157.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
151.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
151.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
148.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
147.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
144.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
135.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
134.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
132.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
131.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
128.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
124.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
123.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
119.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
118.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
117.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
114.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
114.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
114.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
113.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
113.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
112.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
109.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
109.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
108.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
107.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
107.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
106.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
106.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
106.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
105.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
105.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
105.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
104.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
104.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
104.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
103.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
102.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
101.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
100.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
100.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
100.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
100.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
98.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
98.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
96.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
95.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
94.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
92.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
91.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
90.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
88.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
87.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
87.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
87.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
86.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
85.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
85.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
85.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
85.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
84.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
84.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
83.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
82.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
82.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
79.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
79.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
78.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
78.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
78.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
77.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
77.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
76.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
76.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
76.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
75.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
74.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
73.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
73.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
72.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
71.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
71.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
71.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
70.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
69.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
69.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
69.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
68.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
68.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
68.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
68.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
67.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
65.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
64.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
64.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
64.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
63.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
62.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
62.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
59.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
57.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
57.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
57.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
57.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
53.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
53.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
52.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
50.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
50.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
49.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
49.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
48.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
47.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
45.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
43.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
42.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
41.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
41.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
41.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
39.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
3.7
425
Tumor
2.5
375
Tumor
2.1
635
Tumor
2.1
343
Tumor
2.1
283
Tumor
1.8
125
Tumor
1.8
815
Tumor
1.6
671
Tumor
1.6
351
Tumor
1.5
391
Tumor
1.4
313
Tumor
1.3
975
Tumor
1.3
395
Tumor
1.2
433
Tumor
1.2
135
Tumor
1.1
863
Tumor
1.0
517
Tumor
1.0
851
Tumor
1.0
221
Tumor
1.0
745
Tumor
1.0
921
Tumor
0.9
257
Tumor
0.8
661
Tumor
0.8
217
Tumor
0.8
951
Tumor
0.8
823
Tumor
0.8
813
Tumor
0.8
817
Tumor
0.8
471
Tumor
0.7
535
Tumor
0.7
271
Tumor
0.7
223
Tumor
0.6
1025
Tumor
0.6
421
Tumor
0.6
187
Tumor
0.6
553
Tumor
0.6
557
Tumor
0.5
573
Tumor
0.5
171
Tumor
0.5
567
Tumor
0.5
741
Tumor
0.5
331
Tumor
0.4
563
Tumor
0.4
983
Tumor
0.4
131
Tumor
0.4
641
Tumor
0.4
724
Normal
0.4
715
Tumor
0.3
883
Tumor
0.3
443
Tumor
0.3
231
Tumor
0.3
697
Tumor
0.3
636
Normal
0.2
574
Normal
0.2
491
Tumor
0.2
743
Tumor
0.1
1021
Tumor
0.1
132
Normal
0.1
145
Tumor
0.1
112
Tumor
0.1
387
Tumor
0.1
672
Normal
0.1
385
Tumor
0.1
1027
Tumor
0.1
713
Tumor
0.1
297
Tumor
0.0
967
Tumor
0.0
665
Tumor
0.0
477
Tumor
0.0
427
Tumor
0.0
314
Normal
0.0
564
Normal
0.0
284
Normal
0.0
138
Normal
0.0
881
Tumor
0.0
361
Tumor
0.0
191
Tumor
0.0
355
Tumor
0.0
463
Tumor
0.0
363
Tumor
0.0
617
Tumor
0.0
537
Tumor
0.0
311
Tumor
0.0
965
Tumor
-0.1
525
Tumor
-0.1
127
Tumor
-0.1
568
Normal
-0.1
285
Tumor
-0.1
663
Tumor
-0.1
146
Normal
-0.1
444
Normal
-0.1
727
Tumor
-0.1
367
Tumor
-0.1
213
Tumor
-0.1
136
Normal
-0.1
572
Normal
-0.1
186
Normal
-0.1
383
Tumor
-0.2
1041
Tumor
-0.2
447
Tumor
-0.2
172
Normal
-0.2
451
Tumor
-0.2
814
Normal
-0.2
148
Normal
-0.2
188
Normal
-0.2
468
Normal
-0.2
446
Normal
-0.2
483
Tumor
-0.2
147
Tumor
-0.2
228
Normal
-0.2
571
Tumor
-0.2
685
Tumor
-0.3
464
Normal
-0.3
545
Tumor
-0.3
558
Normal
-0.3
664
Normal
-0.3
666
Normal
-0.3
925
Tumor
-0.3
224
Normal
-0.3
452
Normal
-0.3
937
Tumor
-0.3
162
Normal
-0.3
647
Tumor
-0.3
981
Tumor
-0.3
212
Normal
-0.3
332
Normal
-0.3
1031
Tumor
-0.3
976
Normal
-0.3
113
Tumor
-0.3
185
Tumor
-0.3
662
Normal
-0.4
648
Normal
-0.4
777
Tumor
-0.4
137
Tumor
-0.4
123
Tumor
-0.4
445
Tumor
-0.4
737
Tumor
-0.4
142
Normal
-0.4
455
Tumor
-0.4
466
Normal
-0.4
982
Normal
-0.4
431
Tumor
-0.4
977
Tumor
-0.4
227
Tumor
-0.4
126
Normal
-0.4
368
Normal
-0.4
277
Tumor
-0.4
462
Normal
-0.4
482
Normal
-0.4
497
Tumor
-0.4
426
Normal
-0.5
723
Tumor
-0.5
642
Normal
-0.5
432
Normal
-0.5
286
Normal
-0.5
456
Normal
-0.5
365
Tumor
-0.5
268
Normal
-0.5
376
Normal
-0.5
124
Normal
-0.5
465
Tumor
-0.5
141
Tumor
-0.5
396
Normal
-0.5
913
Tumor
-0.5
493
Tumor
-0.5
474
Normal
-0.5
394
Normal
-0.5
312
Normal
-0.5
415
Tumor
-0.5
628
Normal
-0.5
342
Normal
-0.6
943
Tumor
-0.6
111
Normal
-0.6
353
Tumor
-0.6
472
Normal
-0.6
413
Tumor
-0.6
278
Normal
-0.6
298
Normal
-0.6
392
Normal
-0.6
618
Normal
-0.6
435
Tumor
-0.6
362
Normal
-0.6
861
Tumor
-0.6
616
Normal
-0.6
492
Normal
-0.6
478
Normal
-0.6
358
Normal
-0.6
615
Tumor
-0.6
923
Tumor
-0.6
128
Normal
-0.6
467
Tumor
-0.6
1015
Tumor
-0.6
354
Normal
-0.6
481
Tumor
-0.6
527
Tumor
-0.6
366
Normal
-0.7
756
Normal
-0.7
424
Normal
-0.7
627
Tumor
-0.7
416
Normal
-0.7
744
Normal
-0.7
192
Normal
-0.7
114
Normal
-0.7
434
Normal
-0.7
356
Normal
-0.7
498
Normal
-0.7
884
Normal
-0.7
386
Normal
-0.7
912
Normal
-0.7
978
Normal
-0.7
388
Normal
-0.7
755
Tumor
-0.7
917
Tumor
-0.7
963
Tumor
-0.7
721
Tumor
-0.7
857
Tumor
-0.7
1045
Tumor
-0.7
878
Normal
-0.7
436
Normal
-0.7
824
Normal
-0.7
964
Normal
-0.7
873
Tumor
-0.7
716
Normal
-0.7
696
Normal
-0.7
785
Tumor
-0.8
461
Tumor
-0.8
422
Normal
-0.8
423
Tumor
-0.8
536
Normal
-0.8
428
Normal
-0.8
222
Normal
-0.8
1016
Normal
-0.8
214
Normal
-0.8
882
Normal
-0.8
1043
Tumor
-0.8
393
Tumor
-0.8
742
Normal
-0.8
218
Normal
-0.8
384
Normal
-0.8
328
Normal
-0.8
722
Normal
-0.8
344
Normal
-0.8
195
Tumor
-0.8
364
Normal
-0.8
818
Normal
-0.8
211
Tumor
-0.8
528
Normal
-0.8
196
Normal
-0.8
1014
Normal
-0.8
327
Tumor
-0.8
261
Tumor
-0.8
958
Normal
-0.8
487
Tumor
-0.9
1044
Normal
-0.9
161
Tumor
-0.9
534
Normal
-0.9
448
Normal
-0.9
778
Normal
-0.9
414
Normal
-0.9
698
Normal
-0.9
953
Tumor
-0.9
494
Normal
-0.9
1046
Normal
-0.9
523
Tumor
-0.9
412
Normal
-0.9
746
Normal
-0.9
341
Tumor
-0.9
786
Normal
-0.9
538
Normal
-0.9
488
Normal
-0.9
858
Normal
-0.9
984
Normal
-0.9
852
Normal
-1.0
352
Normal
-1.0
714
Normal
-1.0
515
Tumor
-1.0
911
Tumor
-1.0
524
Normal
-1.0
473
Tumor
-1.0
484
Normal
-1.0
956
Normal
-1.1
914
Normal
-1.1
1042
Normal
-1.1
957
Tumor
-1.1
728
Normal
-1.1
816
Normal
-1.1
1026
Normal
-1.1
1013
Tumor
-1.1
533
Tumor
-1.1
546
Normal
-1.1
272
Normal
-1.1
686
Normal
-1.1
867
Tumor
-1.2
232
Normal
-1.2
968
Normal
-1.3
357
Tumor
-1.3
738
Normal
-1.3
966
Normal
-1.3
262
Normal
-1.3
554
Normal
-1.3
411
Tumor
-1.3
864
Normal
-1.3
916
Normal
-1.3
1022
Normal
-1.4
868
Normal
-1.4
267
Tumor
-1.4
1028
Normal
-1.4
918
Normal
-1.4
874
Normal
-1.4
915
Tumor
-1.4
955
Tumor
-1.4
1032
Normal
-1.4
944
Normal
-1.5
866
Normal
-1.5
862
Normal
-1.5
258
Normal
-1.5
924
Normal
-1.5
952
Normal
-1.6
922
Normal
-1.6
954
Normal
-1.6
516
Normal
-1.6
926
Normal
-1.7
938
Normal
-1.7
695
Tumor
-1.7
865
Tumor
-1.7
526
Normal
-1.7
513
Tumor
-1.8
514
Normal
-1.9
518
Normal
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.