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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
36.5
nTPM
HPA Brain:
114.7
nTPM
GTEx:
36.5
nTPM
FANTOM5:
56.3
Scaled Tags Per Million
Pig:
64.6
nTPM
Mouse:
86.6
nTPM
Allen mouse:
8.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 106.2
2586
Male, age 75, left hemisphere
143.8
2411
Female, age 72, unknown
119.4
2666
Male, age 74, left hemisphere
111.0
1870
Female, age 42, unknown
107.6
2019
Male, age 18, unknown
104.8
1830
Male, age 51, unknown
103.0
1833
Male, age 53, unknown
99.8
1827
Male, age 72, unknown
99.1
2828
Female, age 72, unknown
95.9
2219
Male, age 76, both hemispheres
77.8
Dorsal raphe nucleus nTPM: 114.7
2047
Male, age 72, unknown
127.5
2298
Female, age 72, unknown
120.1
2750
Male, age 76, both hemispheres
112.0
1828
Male, age 53, unknown
108.6
2016
Female, age 72, unknown
105.2
Inferior colliculus nTPM: 96.1
2097
Female, age 72, unknown
103.6
1848
Female, age 42, unknown
97.2
1890
Male, age 53, unknown
94.4
2849
Male, age 72, unknown
89.1
Median raphe nucleus nTPM: 101.3
2220
Male, age 76, midline
101.3
Periaquaductal grey, anterior nTPM: 108.2
2502
Female, age 75, unknown
114.3
1947
Male, age 18, unknown
110.9
1795
Male, age 51, unknown
99.4
Periaquaductal grey, dorsal nTPM: 97.8
2464
Female, age 72, unknown
100.6
1840
Male, age 53, unknown
100.3
1831
Male, age 72, unknown
98.4
2850
Male, age 76, both hemispheres
92.1
Periaquaductal grey, lateral nTPM: 92.9
2053
Male, age 18, unknown
101.3
2272
Male, age 74, both hemispheres
89.3
2140
Male, age 76, both hemispheres
88.2
Pretectal area nTPM: 99.2
1816
Male, age 51, unknown
108.2
1815
Male, age 53, unknown
104.5
2273
Male, age 74, both hemispheres
104.0
2667
Female, age 75, unknown
104.0
1817
Female, age 42, unknown
103.4
2224
Female, age 72, unknown
99.5
1944
Female, age 72, unknown
98.4
2007
Male, age 72, unknown
98.2
2407
Male, age 75, both hemispheres
97.2
2825
Male, age 18, unknown
96.5
2316
Male, age 76, right hemisphere
77.1
Red nucleus nTPM: 102.3
1821
Female, age 72, unknown
124.9
1904
Male, age 53, unknown
108.9
2503
Female, age 72, unknown
107.7
1865
Male, age 51, unknown
106.1
2227
Male, age 72, unknown
105.3
2588
Male, age 74, left hemisphere
101.7
2769
Male, age 72, unknown
101.0
1954
Female, age 42, unknown
99.4
2785
Male, age 18, unknown
97.8
2584
Male, age 75, left hemisphere
96.4
2725
Female, age 75, unknown
91.6
2823
Male, age 76, right hemisphere
86.4
Substantia nigra nTPM: 100.8
2583
Male, age 75, right hemisphere
110.9
1916
Female, age 42, unknown
110.1
1851
Male, age 51, unknown
109.6
1941
Male, age 53, unknown
99.6
2241
Male, age 72, unknown
99.0
2665
Male, age 74, both hemispheres
98.9
2409
Female, age 72, unknown
97.6
2590
Female, age 75, unknown
96.2
1889
Female, age 72, unknown
93.6
2699
Male, age 18, unknown
92.9
Superior colliculus nTPM: 99.1
2664
Male, age 75, both hemispheres
110.3
2668
Female, age 75, unknown
103.3
2261
Male, age 18, unknown
102.1
1913
Female, age 42, unknown
100.4
1995
Male, age 72, unknown
100.4
2587
Male, age 74, left hemisphere
98.5
1796
Male, age 53, unknown
97.5
2087
Female, age 72, unknown
97.3
1839
Male, age 51, unknown
95.7
1895
Male, age 76, right hemisphere
85.5
Ventral tegmental area nTPM: 107.0
2410
Female, age 72, unknown
125.3
2223
Female, age 72, unknown
112.2
1915
Female, age 42, unknown
106.3
2021
Male, age 53, unknown
106.3
1942
Male, age 51, unknown
98.4
2218
Male, age 76, both hemispheres
93.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 36.5
Samples: 139
Max nTPM: 65.6
Min nTPM: 26.8
Std nTPM: 5.9
Median nTPM: 35.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
65.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
55.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
51.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
49.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
48.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
48.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
47.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
46.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
46.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
46.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
45.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
45.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
44.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
44.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
44.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
44.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
43.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
43.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
43.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
42.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
42.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
41.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
41.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
41.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
41.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
40.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
40.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
40.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
40.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
40.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
40.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
40.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
39.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
39.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
39.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
39.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
39.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
39.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
38.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
38.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
38.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
38.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
38.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
38.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
37.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
37.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
37.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
37.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
37.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
37.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
37.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
37.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
37.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
37.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
37.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
37.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
36.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
36.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
36.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
36.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
36.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
36.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
35.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
35.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
35.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
35.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
35.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
35.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
35.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
35.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
35.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
35.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
35.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
35.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
35.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
34.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
34.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
34.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
34.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
34.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
34.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
34.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
34.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
34.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
34.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
34.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
34.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
33.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
33.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
33.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
33.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
33.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
33.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
33.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
33.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
33.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
33.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
33.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
32.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
32.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
32.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
32.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
32.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
32.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
32.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
32.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
32.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
32.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
31.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
31.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
31.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
31.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
31.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
31.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
31.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
31.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
31.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
30.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
30.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
30.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
30.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
30.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
30.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
29.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
29.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
29.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
29.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
28.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
28.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
27.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
27.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
27.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
27.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
27.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 86.6
Samples: 4
Max nTPM: 88.9
Min nTPM: 83.7
Sample A
Male
87.9
Sample B
Male
85.9
Sample C
Female
88.9
Sample D
Female
83.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.