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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
37.2
nTPM
HPA Brain:
94.4
nTPM
GTEx:
37.2
nTPM
FANTOM5:
39.2
Scaled Tags Per Million
Pig:
62.0
nTPM
Mouse:
99.7
nTPM
Allen mouse:
13.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA029018
Antibody HPA064339
Antibody CAB026381
Glial cells
Not detected
High
Not detected
Neuronal cells
Medium
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 82.3
1898
Male, age 80, left hemisphere
95.0
2529
Female, age 94, left hemisphere
87.3
1855
Male, age 76, left hemisphere
79.1
1911
Female, age 85, right hemisphere
78.6
2148
Female, age 91, left hemisphere
77.5
2621
Female, age 67, right hemisphere
76.6
Dentate gyrus nTPM: 84.3
2528
Male, age 74, both hemispheres
96.7
2530
Female, age 94, left hemisphere
96.7
2010
Male, age 76, both hemispheres
92.8
2246
Female, age 85, both hemispheres
81.2
1927
Female, age 91, both hemispheres
76.7
2531
Female, age 67, both hemispheres
61.8
Entorhinal gyrus nTPM: 84.2
2117
Female, age 91, right hemisphere
97.9
1938
Female, age 85, left hemisphere
87.9
1787
Male, age 76, left hemisphere
87.7
2764
Male, age 80, right hemisphere
87.4
2613
Female, age 94, left hemisphere
79.2
2686
Male, age 75, right hemisphere
65.2
Hippocampus, CA1 nTPM: 94.4
2749
Male, age 80, left hemisphere
131.5
1873
Female, age 85, both hemispheres
88.9
2527
Male, age 74, both hemispheres
87.2
2082
Female, age 91, right hemisphere
86.4
2045
Male, age 76, both hemispheres
78.0
Hippocampus, CA2 nTPM: 90.6
1963
Male, age 80, left hemisphere
110.7
2249
Male, age 74, both hemispheres
91.1
1892
Male, age 76, both hemispheres
90.7
1940
Female, age 85, left hemisphere
90.2
2113
Female, age 91, right hemisphere
81.7
2437
Female, age 94, left hemisphere
79.2
Hippocampus, CA3 nTPM: 91.1
2137
Male, age 80, left hemisphere
121.5
2436
Male, age 74, both hemispheres
104.6
2620
Female, age 94, left hemisphere
86.6
1867
Male, age 76, both hemispheres
83.4
1891
Female, age 85, both hemispheres
81.2
2861
Female, age 67, both hemispheres
69.4
Parahippocampal cortex nTPM: 79.6
1850
Male, age 80, both hemispheres
90.0
1933
Female, age 85, both hemispheres
88.6
2018
Male, age 76, both hemispheres
85.6
1990
Female, age 91, right hemisphere
84.8
2250
Female, age 67, right hemisphere
78.8
2532
Female, age 72, left hemisphere
78.8
2692
Male, age 74, both hemispheres
77.9
2245
Female, age 91, both hemispheres
75.3
2693
Female, age 94, both hemispheres
71.4
2622
Female, age 67, right hemisphere
64.8
Perirhinal gyrus nTPM: 86.0
1794
Male, age 80, right hemisphere
92.9
1841
Female, age 85, right hemisphere
90.3
1847
Female, age 91, left hemisphere
84.7
2521
Female, age 94, right hemisphere
82.6
2848
Male, age 76, right hemisphere
79.8
Subiculum nTPM: 88.7
2042
Male, age 76, both hemispheres
99.7
1901
Male, age 80, both hemispheres
97.4
1977
Female, age 85, both hemispheres
94.3
2619
Male, age 74, both hemispheres
87.4
2729
Female, age 91, right hemisphere
82.9
2438
Female, age 94, left hemisphere
70.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 37.2
Samples: 197
Max nTPM: 55.0
Min nTPM: 20.7
Std nTPM: 5.5
Median nTPM: 36.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
55.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
54.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
53.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
53.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
50.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
48.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
48.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
47.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
46.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
46.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
45.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
45.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
45.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
45.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
45.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
45.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
45.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
45.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
44.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
44.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
44.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
44.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
44.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
44.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
43.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
43.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
43.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
43.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
43.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
43.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
43.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
42.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
42.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
42.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
42.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
42.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
41.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
41.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
40.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
40.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
40.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
40.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
40.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
40.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
40.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
40.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
40.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
40.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
40.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
40.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
40.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
39.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
39.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
39.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
39.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
39.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
39.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
39.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
39.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
39.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
39.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
39.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
39.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
38.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
38.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
38.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
38.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
38.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
38.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
38.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
38.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
38.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
38.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
38.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
38.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
38.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
38.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
38.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
37.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
37.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
37.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
37.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
37.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
37.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
37.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
37.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
37.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
37.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
37.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
37.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
37.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
37.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
37.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
37.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
37.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
37.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
36.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
36.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
36.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
36.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
36.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
36.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
36.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
36.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
36.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
36.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
36.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
36.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
36.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
36.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
36.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
36.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
36.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
36.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
35.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
35.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
35.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
35.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
35.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
35.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
35.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
35.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
35.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
35.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
35.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
35.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
35.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
35.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
35.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
35.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
35.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
35.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
35.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
35.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
34.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
34.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
34.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
34.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
34.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
34.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
34.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
34.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
33.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
33.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
33.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
33.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
33.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
33.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
33.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
33.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
33.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
33.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
33.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
32.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
32.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
32.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
32.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
32.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
32.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
32.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
32.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
32.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
32.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
31.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
31.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
31.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
31.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
31.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
31.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
31.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
31.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
31.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
31.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
31.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
31.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
30.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
30.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
30.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
30.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
30.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
30.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
30.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
30.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
30.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
29.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
29.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
29.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
29.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
28.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
27.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
26.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
26.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
25.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
24.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
22.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
20.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 91.7
Samples: 4
Max nTPM: 96.9
Min nTPM: 86.3
Sample A
Male
90.9
Sample B
Male
86.3
Sample C
Female
92.6
Sample D
Female
96.9
Hippocampal formation nTPM: 99.7
Samples: 4
Max nTPM: 105.2
Min nTPM: 96.1
Sample A
Male
100.9
Sample B
Male
96.1
Sample C
Female
105.2
Sample D
Female
96.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.