We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
261
Tumor
3.7
744
Normal
2.1
388
Normal
2.0
387
Tumor
2.0
313
Tumor
1.9
391
Tumor
1.8
396
Normal
1.8
394
Normal
1.7
386
Normal
1.7
186
Normal
1.6
172
Normal
1.6
277
Tumor
1.6
162
Normal
1.5
392
Normal
1.5
171
Tumor
1.4
861
Tumor
1.4
571
Tumor
1.4
148
Normal
1.3
695
Tumor
1.3
425
Tumor
1.3
112
Tumor
1.3
426
Normal
1.2
497
Tumor
1.1
222
Normal
1.1
188
Normal
1.1
564
Normal
1.1
452
Normal
1.0
465
Tumor
1.0
114
Normal
1.0
393
Tumor
1.0
161
Tumor
1.0
126
Normal
1.0
111
Normal
1.0
422
Normal
1.0
568
Normal
1.0
527
Tumor
1.0
414
Normal
0.9
448
Normal
0.9
218
Normal
0.9
456
Normal
0.9
195
Tumor
0.9
423
Tumor
0.8
627
Tumor
0.8
574
Normal
0.8
298
Normal
0.8
937
Tumor
0.8
124
Normal
0.8
278
Normal
0.8
127
Tumor
0.8
128
Normal
0.8
536
Normal
0.8
912
Normal
0.8
267
Tumor
0.8
635
Tumor
0.8
517
Tumor
0.8
214
Normal
0.7
185
Tumor
0.7
1044
Normal
0.7
715
Tumor
0.7
366
Normal
0.7
1046
Normal
0.7
925
Tumor
0.7
1043
Tumor
0.7
884
Normal
0.7
368
Normal
0.7
878
Normal
0.7
196
Normal
0.7
951
Tumor
0.7
258
Normal
0.6
451
Tumor
0.6
217
Tumor
0.6
365
Tumor
0.6
428
Normal
0.6
427
Tumor
0.6
642
Normal
0.6
395
Tumor
0.6
464
Normal
0.6
777
Tumor
0.6
447
Tumor
0.6
493
Tumor
0.6
354
Normal
0.6
618
Normal
0.6
977
Tumor
0.6
697
Tumor
0.5
1015
Tumor
0.5
1045
Tumor
0.5
424
Normal
0.5
882
Normal
0.5
955
Tumor
0.5
376
Normal
0.5
113
Tumor
0.5
385
Tumor
0.5
341
Tumor
0.5
816
Normal
0.5
533
Tumor
0.5
353
Tumor
0.5
535
Tumor
0.5
332
Normal
0.5
221
Tumor
0.5
358
Normal
0.5
192
Normal
0.5
191
Tumor
0.5
615
Tumor
0.5
721
Tumor
0.5
915
Tumor
0.5
921
Tumor
0.4
572
Normal
0.4
413
Tumor
0.4
187
Tumor
0.4
361
Tumor
0.4
983
Tumor
0.4
466
Normal
0.4
352
Normal
0.4
436
Normal
0.4
918
Normal
0.4
262
Normal
0.4
852
Normal
0.4
698
Normal
0.4
312
Normal
0.4
331
Tumor
0.4
123
Tumor
0.4
513
Tumor
0.4
1016
Normal
0.4
314
Normal
0.4
328
Normal
0.4
283
Tumor
0.4
421
Tumor
0.4
232
Normal
0.4
968
Normal
0.4
1013
Tumor
0.4
545
Tumor
0.4
958
Normal
0.4
911
Tumor
0.3
823
Tumor
0.3
342
Normal
0.3
268
Normal
0.3
362
Normal
0.3
147
Tumor
0.3
713
Tumor
0.3
926
Normal
0.3
351
Tumor
0.3
738
Normal
0.3
944
Normal
0.3
344
Normal
0.3
785
Tumor
0.3
411
Tumor
0.3
136
Normal
0.3
1014
Normal
0.3
981
Tumor
0.3
285
Tumor
0.2
914
Normal
0.2
917
Tumor
0.2
755
Tumor
0.2
616
Normal
0.2
554
Normal
0.2
922
Normal
0.2
272
Normal
0.2
746
Normal
0.2
938
Normal
0.2
132
Normal
0.2
916
Normal
0.2
976
Normal
0.2
865
Tumor
0.2
964
Normal
0.2
924
Normal
0.2
817
Tumor
0.2
135
Tumor
0.2
984
Normal
0.2
483
Tumor
0.2
491
Tumor
0.2
131
Tumor
0.2
231
Tumor
0.2
858
Normal
0.2
756
Normal
0.2
228
Normal
0.2
553
Tumor
0.2
435
Tumor
0.2
952
Normal
0.2
943
Tumor
0.1
384
Normal
0.1
745
Tumor
0.1
498
Normal
0.1
223
Tumor
0.1
224
Normal
0.1
954
Normal
0.1
468
Normal
0.1
343
Tumor
0.1
538
Normal
0.1
737
Tumor
0.1
982
Normal
0.1
685
Tumor
0.1
494
Normal
0.1
716
Normal
0.1
975
Tumor
0.1
434
Normal
0.1
558
Normal
0.1
815
Tumor
0.1
213
Tumor
0.1
778
Normal
0.1
415
Tumor
0.1
546
Normal
0.1
923
Tumor
0.1
662
Normal
0.1
257
Tumor
0.1
432
Normal
0.1
137
Tumor
0.1
515
Tumor
0.1
965
Tumor
0.1
956
Normal
0.1
966
Normal
0.0
866
Normal
0.0
146
Normal
0.0
617
Tumor
0.0
813
Tumor
0.0
874
Normal
0.0
145
Tumor
0.0
978
Normal
0.0
868
Normal
0.0
487
Tumor
0.0
953
Tumor
0.0
142
Normal
0.0
724
Normal
0.0
534
Normal
0.0
814
Normal
0.0
857
Tumor
0.0
286
Normal
0.0
364
Normal
0.0
741
Tumor
0.0
664
Normal
0.0
873
Tumor
0.0
557
Tumor
0.0
431
Tumor
0.0
271
Tumor
0.0
528
Normal
0.0
963
Tumor
0.0
666
Normal
0.0
648
Normal
0.0
714
Normal
0.0
722
Normal
0.0
327
Tumor
0.0
357
Tumor
0.0
1026
Normal
0.0
786
Normal
0.0
484
Normal
0.0
1022
Normal
-0.1
686
Normal
-0.1
297
Tumor
-0.1
211
Tumor
-0.1
636
Normal
-0.1
696
Normal
-0.1
567
Tumor
-0.1
355
Tumor
-0.1
663
Tumor
-0.1
141
Tumor
-0.1
227
Tumor
-0.1
212
Normal
-0.1
728
Normal
-0.1
125
Tumor
-0.1
743
Tumor
-0.1
862
Normal
-0.1
383
Tumor
-0.1
526
Normal
-0.1
514
Normal
-0.1
138
Normal
-0.1
311
Tumor
-0.1
488
Normal
-0.1
672
Normal
-0.1
628
Normal
-0.1
967
Tumor
-0.1
1025
Tumor
-0.1
523
Tumor
-0.1
864
Normal
-0.1
537
Tumor
-0.2
446
Normal
-0.2
284
Normal
-0.2
1042
Normal
-0.2
375
Tumor
-0.2
723
Tumor
-0.2
518
Normal
-0.2
1031
Tumor
-0.2
356
Normal
-0.2
1032
Normal
-0.2
1028
Normal
-0.2
492
Normal
-0.2
957
Tumor
-0.2
867
Tumor
-0.2
525
Tumor
-0.2
742
Normal
-0.2
444
Normal
-0.3
883
Tumor
-0.3
363
Tumor
-0.3
367
Tumor
-0.3
412
Normal
-0.3
433
Tumor
-0.3
641
Tumor
-0.3
445
Tumor
-0.3
1027
Tumor
-0.3
1041
Tumor
-0.3
818
Normal
-0.3
443
Tumor
-0.4
1021
Tumor
-0.4
647
Tumor
-0.4
863
Tumor
-0.5
824
Normal
-0.5
665
Tumor
-0.5
524
Normal
-0.5
563
Tumor
-0.6
416
Normal
-0.6
463
Tumor
-0.6
851
Tumor
-0.6
516
Normal
-0.6
727
Tumor
-0.7
881
Tumor
-0.8
661
Tumor
-0.9
913
Tumor
-0.9
573
Tumor
-0.9
671
Tumor
-1.0
455
Tumor
-1.0
877
Tumor
-1.0
467
Tumor
-1.3
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
